HHsearch alignment for GI: 254780601 and conserved domain: KOG0352

>KOG0352 consensus.
Probab=99.97  E-value=1e-29  Score=218.96  Aligned_cols=330  Identities=23%  Similarity=0.291  Sum_probs=235.8

Q ss_pred             HHHHHHHHH-CCCCC-CCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHH
Q ss_conf             899999997-87987-898999999999759-969999289874689999999998610421225568827999849989
Q gi|254780601|r    9 QVIGEALSE-RGYVN-LTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRE   85 (573)
Q Consensus         9 ~~l~~~l~~-~g~~~-pt~iQ~~~ip~~l~g-~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrE   85 (573)
T Consensus         5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~-----------g-ITIV~SPLiA   72 (641)
T KOG0352           5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHG-----------G-ITIVISPLIA   72 (641)
T ss_pred             HHHHHHHHHHHCCCHHCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCHHHHHC-----------C-EEEEECHHHH
T ss_conf             799999999708301037578998999883467379964688760145426587728-----------8-1899307899


Q ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH---HHC---CCCEEEEECCCCHH-----HHHHCCCCCCCCCEEEEE
Q ss_conf             9999999999985446987999988998799999---612---89759982231013-----321000122464318999
Q gi|254780601|r   86 LAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR---DLQ---NGAHIVVGTPGRLC-----DHIRGKGLNISHLKAVVL  154 (573)
Q Consensus        86 La~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~---~l~---~~~~iiv~TPgrl~-----d~~~~~~l~l~~v~~lVl  154 (573)
T Consensus        73 L---IkDQiDHL~-~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vV  147 (641)
T KOG0352          73 L---IKDQIDHLK-RLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVV  147 (641)
T ss_pred             H---HHHHHHHHH-HHCCCHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH-HHHHHCEEEEEEE
T ss_conf             9---999987787-4056166640121078899998888743775148997631555666899999-8874140224773


Q ss_pred             ECCCCCCCCH--HHHHHHHH---HHHCCCCCCEEEEECCCCCCCHH-HH-HHHCCCCCCCCCCCCCCCCCCCCHHCCCCC
Q ss_conf             6131100100--12357888---75214334225631111222001-11-121012333323332325665200000000
Q gi|254780601|r  155 DEADEMLDLG--FRDDIEFI---LDSSPKKRRMLMFSATISPAITT-LA-KNYQKDAVRVNIASENRQHSDIDYRAVLVA  227 (573)
Q Consensus       155 DEaD~ml~~g--f~~~i~~i---~~~~p~~~q~~l~SAT~~~~i~~-l~-~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~  227 (573)
T Consensus       148 DEAHCVSQWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR-----~NLFYD~~  221 (641)
T KOG0352         148 DEAHCVSQWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR-----DNLFYDNH  221 (641)
T ss_pred             CHHHHHHHHCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHCCCCHH-----HHHHHHHH
T ss_conf             3466677626666820444666774469-99669854346776779999997605854440574145-----44457888


Q ss_pred             C----CHHHHHHHHC----CC-------CCCC--CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             0----0024554200----10-------2356--4167751302334565555542266630104899999999998665
Q gi|254780601|r  228 L----SDRDNAIVNI----LR-------YHGA--KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMM  290 (573)
Q Consensus       228 ~----~~k~~~l~~l----l~-------~~~~--~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~f  290 (573)
T Consensus       222 ~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~W  301 (641)
T KOG0352         222 MKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKW  301 (641)
T ss_pred             HHHHHCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf             88764137778999999862890444117877777327996028899989887532476267765001411268899998


Q ss_pred             HCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf             44881499853865001457887338970588747899986030103788860256405999999999999
Q gi|254780601|r  291 RDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR  361 (573)
Q Consensus       291 r~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~  361 (573)
T Consensus       302 M~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~  372 (641)
T KOG0352         302 MNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS  372 (641)
T ss_pred             HCCCCCEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf             62788779996024446687761599951705657899886153566777252013332140577779977