HHsearch alignment for GI: 254780601 and conserved domain: KOG1001

Probab=94.27  E-value=0.16  Score=29.35  Aligned_cols=109  Identities=27%  Similarity=0.288  Sum_probs=59.9

Q ss_pred             EEECCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf             999289874689-9999999986104212255688279998499899999999999985446987999988998799999
Q gi|254780601|r   41 LVSAQTGSGKTV-AFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR  119 (573)
Q Consensus        41 i~~a~TGsGKT~-af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~  119 (573)
T Consensus       156 Iladd~glgkt~~ti~l~l~~~~~~~~-~~~~~~~kttLivcp~s~~-~qW~~elek~~~~~~l~v~v~~gr~kd~---~  230 (674)
T KOG1001         156 ILADDMGLGKTVKTIALILKQKLKSKE-EDRQKEFKTTLIVCPTSLL-TQWKTELEKVTEEDKLSIYVYHGRTKDK---S  230 (674)
T ss_pred             EEEECCCCCHHHHHHHHHHHCCCCCCC-HHHCCCCCCEEEECCHHHH-HHHHHHHHCCCCCCCEEEEEECCCCCCC---C
T ss_conf             676510141589999999964367710-2330246743696665888-8888887335886646999961642433---1


Q ss_pred             HHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf             6128975998223101332100012246431899961311
Q gi|254780601|r  120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE  159 (573)
Q Consensus       120 ~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~  159 (573)
T Consensus       231 el-~~~dvVltTy~il~~----~~l~~i~w~Riildea~~  265 (674)
T KOG1001         231 EL-NSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHT  265 (674)
T ss_pred             HH-CCCCEEEEEHHHHHC----CCCCCEEEEEEEECCCCC
T ss_conf             34-177669933788515----350012578887012002