HHsearch alignment for GI: 254780601 and conserved domain: PRK00411

Probab=96.99  E-value=0.028  Score=34.54  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=51.1

Q ss_pred             HHHHHHCC---CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE-EECCCHHHHHHHHHHH-HHHHHHCCCE
Q ss_conf             99999759---96999928987468999999999861042122556882799-9849989999999999-9985446987
Q gi|254780601|r   30 ILNPDLRE---KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL-AIAPTRELAVQVGREL-EWLYAKTGVV  104 (573)
Q Consensus        30 ~ip~~l~g---~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~l-il~PTrELa~Qv~~~~-~~l~~~~~~~  104 (573)
T Consensus        45 ~l~~~l~g~~~~n~~I~G~pGTGKT~~v-k~v~~~l~~~~------~~~~~vyINc~~~~t~~~i~~~i~~~L~---~~~  114 (394)
T PRK00411         45 ALRPALRGSRPSNVLILGPPGTGKTTTV-KKVFEELEEAA------LKVVYVYINCQIDRTRYAILSEIARSLF---GHP  114 (394)
T ss_pred             HHHHHHCCCCCCCEEEECCCCCCHHHHH-HHHHHHHHHHC------CCCEEEEEECCCCCCHHHHHHHHHHHHC---CCC
T ss_conf             9999975999984799889999899999-99999999746------8965999969668989999999999956---998


Q ss_pred             EEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf             999988998799999612897599822310133210001224643189996131100100123578887
Q gi|254780601|r  105 VAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFIL  173 (573)
Q Consensus       105 v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~  173 (573)
T Consensus       115 ~-p-~~G~s~~~~~~~l--------------~~~l~----~~~~~~ivvLDEiD~L~~~~~~~vLY~L~  163 (394)
T PRK00411        115 P-P-SSGLSFDELFDKI--------------AEYLD----ERDRVLIVALDDINYLVEKEGNDVLYSLL  163 (394)
T ss_pred             C-C-CCCCCHHHHHHHH--------------HHHHH----CCCCEEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf             9-8-7787899999999--------------99861----66975899996554020366508999998