HHsearch alignment for GI: 254780601 and conserved domain: PRK01172

>PRK01172 ski2-like helicase; Provisional.
Probab=100.00  E-value=6.5e-39  Score=280.85  Aligned_cols=340  Identities=22%  Similarity=0.271  Sum_probs=243.1

Q ss_pred             CCCCC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf             99777-99889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r    1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA   79 (573)
Q Consensus         1 m~~f~-~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li   79 (573)
T Consensus         1 m~i~~~~~~~~~~~~~~~~g~-~l~p~Q~ea~~~~~~gkNllvsaPTgsGKTlvAe~ai~~~l~~~---------~k~iy   70 (674)
T PRK01172          1 MKISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---------LKSIY   70 (674)
T ss_pred             CCHHHCCCCHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---------CCEEE
T ss_conf             952332999799999996799-88989999999997799599978999869999999999999858---------97999


Q ss_pred             ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf             84998999999999999854469879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r   80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE  159 (573)
Q Consensus        80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~  159 (573)
T Consensus        71 i~P~kAL~~EK~~~~~~~~-~~g~~v~~~tGd~~~~~~--~~-~~~~I~V~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~  146 (674)
T PRK01172         71 IVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD--FI-KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI  146 (674)
T ss_pred             ECCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC--CC-CCCCEEEECHHHHHHHHHCCCHHHCCCCEEEEECCEE
T ss_conf             8778999999999999887-379827788538889801--02-5589999878999999864950221369899826525


Q ss_pred             CCCCHHHHHHHHHH---HHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHC----CCCCCCHHH
Q ss_conf             00100123578887---52143342256311112220011112101233332333232566520000----000000024
Q gi|254780601|r  160 MLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----VLVALSDRD  232 (573)
Q Consensus       160 ml~~gf~~~i~~i~---~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~----~~v~~~~k~  232 (573)
T Consensus       147 i~d~~RG~~lE~~l~kl~~l~~~~qiIgLSATi~N-~~~la~-WL~a-~~~--~~~~RPVpL~~~v~~~~~~~~~~~~~~  221 (674)
T PRK01172        147 IGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNA-SLI--KSNFRPVPLKLGILYRKRLILDGYERS  221 (674)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHH-HHCC-CEE--ECCCCCCCCEEEEEECCCCCCCCHHHC
T ss_conf             06877249999999999853866079971578689-999998-8388-556--479998660898883460114704323


Q ss_pred             HH-HHHCC-C-CCCCCEEEEECCCHHHHHHHHHHHHHC-------------------------CCCCCCCCCCCCHHHHH
Q ss_conf             55-42001-0-235641677513023345655555422-------------------------66630104899999999
Q gi|254780601|r  233 NA-IVNIL-R-YHGAKNAIVFCSTRASVSRFTKVLAEH-------------------------LFQVVALSGELSQQERS  284 (573)
Q Consensus       233 ~~-l~~ll-~-~~~~~~~ivF~~t~~~~~~l~~~L~~~-------------------------g~~~~~lhg~~~q~~R~  284 (573)
T Consensus       222 ~~~~~~l~~~~~~~~~~~LVF~~sR~~~e~~A~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GVafHHaGL~~~eR~  301 (674)
T PRK01172        222 QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR  301 (674)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHH
T ss_conf             45399999999966994799950758899999999985321010010315431120999999962828306899989999


Q ss_pred             HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE----EC----CCCCHHHHHHHHCCCCCCC--CCCEEEEEEC-HHHH
Q ss_conf             9986654488149985386500145788733897----05----8874789998603010378--8860256405-9999
Q gi|254780601|r  285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIH----AE----LSSNPENLLHRSGRTGRAG--RKGMSVFVIP-QNMQ  353 (573)
Q Consensus       285 ~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin----~d----~P~~~~~yvHR~GRtgRag--~~G~ai~l~~-~~e~  353 (573)
T Consensus       302 lVE~~f~~g~i~vl~aT~TLAaGVNlPAr~VIi~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g~D~~G~~ii~~~~~~~~  381 (674)
T PRK01172        302 FIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY  381 (674)
T ss_pred             HHHHHHHCCCCEEEEECCHHHHHCCCCEEEEEEEEEEEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHH
T ss_conf             99999986996499714467654478605999930078179971577789899861358999999887089997282289


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780601|r  354 RRAERL  359 (573)
Q Consensus       354 ~~~~~i  359 (573)
T Consensus       382 ~~~~~~  387 (674)
T PRK01172        382 DAAKKY  387 (674)
T ss_pred             HHHHHH
T ss_conf             999998