HHsearch alignment for GI: 254780601 and conserved domain: PRK01172
>PRK01172 ski2-like helicase; Provisional.
Probab=100.00 E-value=6.5e-39 Score=280.85 Aligned_cols=340 Identities=22% Similarity=0.271 Sum_probs=243.1
Q ss_pred CCCCC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 99777-99889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 1 MKIFE-NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 1 m~~f~-~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
T Consensus 1 m~i~~~~~~~~~~~~~~~~g~-~l~p~Q~ea~~~~~~gkNllvsaPTgsGKTlvAe~ai~~~l~~~---------~k~iy 70 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDF-ELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---------LKSIY 70 (674)
T ss_pred CCHHHCCCCHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---------CCEEE
T ss_conf 952332999799999996799-88989999999997799599978999869999999999999858---------97999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 84998999999999999854469879999889987999996128975998223101332100012246431899961311
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ 159 (573)
T Consensus 71 i~P~kAL~~EK~~~~~~~~-~~g~~v~~~tGd~~~~~~--~~-~~~~I~V~T~Ek~~sl~~~~~~~l~~v~~vViDEiH~ 146 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD--FI-KRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred ECCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC--CC-CCCCEEEECHHHHHHHHHCCCHHHCCCCEEEEECCEE
T ss_conf 8778999999999999887-379827788538889801--02-5589999878999999864950221369899826525
Q ss_pred CCCCHHHHHHHHHH---HHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHC----CCCCCCHHH
Q ss_conf 00100123578887---52143342256311112220011112101233332333232566520000----000000024
Q gi|254780601|r 160 MLDLGFRDDIEFIL---DSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRA----VLVALSDRD 232 (573)
Q Consensus 160 ml~~gf~~~i~~i~---~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~----~~v~~~~k~ 232 (573)
T Consensus 147 i~d~~RG~~lE~~l~kl~~l~~~~qiIgLSATi~N-~~~la~-WL~a-~~~--~~~~RPVpL~~~v~~~~~~~~~~~~~~ 221 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNA-SLI--KSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHH-HHCC-CEE--ECCCCCCCCEEEEEECCCCCCCCHHHC
T ss_conf 06877249999999999853866079971578689-999998-8388-556--479998660898883460114704323
Q ss_pred HH-HHHCC-C-CCCCCEEEEECCCHHHHHHHHHHHHHC-------------------------CCCCCCCCCCCCHHHHH
Q ss_conf 55-42001-0-235641677513023345655555422-------------------------66630104899999999
Q gi|254780601|r 233 NA-IVNIL-R-YHGAKNAIVFCSTRASVSRFTKVLAEH-------------------------LFQVVALSGELSQQERS 284 (573)
Q Consensus 233 ~~-l~~ll-~-~~~~~~~ivF~~t~~~~~~l~~~L~~~-------------------------g~~~~~lhg~~~q~~R~ 284 (573)
T Consensus 222 ~~~~~~l~~~~~~~~~~~LVF~~sR~~~e~~A~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GVafHHaGL~~~eR~ 301 (674)
T PRK01172 222 QVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRR 301 (674)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHH
T ss_conf 45399999999966994799950758899999999985321010010315431120999999962828306899989999
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE----EC----CCCCHHHHHHHHCCCCCCC--CCCEEEEEEC-HHHH
Q ss_conf 9986654488149985386500145788733897----05----8874789998603010378--8860256405-9999
Q gi|254780601|r 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIH----AE----LSSNPENLLHRSGRTGRAG--RKGMSVFVIP-QNMQ 353 (573)
Q Consensus 285 ~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin----~d----~P~~~~~yvHR~GRtgRag--~~G~ai~l~~-~~e~ 353 (573)
T Consensus 302 lVE~~f~~g~i~vl~aT~TLAaGVNlPAr~VIi~~~~r~~~~~~~~l~~~e~~QM~GRAGR~g~D~~G~~ii~~~~~~~~ 381 (674)
T PRK01172 302 FIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASY 381 (674)
T ss_pred HHHHHHHCCCCEEEEECCHHHHHCCCCEEEEEEEEEEEECCCCEEECCHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHH
T ss_conf 99999986996499714467654478605999930078179971577789899861358999999887089997282289
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780601|r 354 RRAERL 359 (573)
Q Consensus 354 ~~~~~i 359 (573)
T Consensus 382 ~~~~~~ 387 (674)
T PRK01172 382 DAAKKY 387 (674)
T ss_pred HHHHHH
T ss_conf 999998