HHsearch alignment for GI: 254780601 and conserved domain: PRK01297

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=96.47  E-value=0.017  Score=36.04  Aligned_cols=71  Identities=23%  Similarity=0.373  Sum_probs=51.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-----CCCCCC-CCCCCCC
Q ss_conf             4167751302334565555542----26663010489999999999866544881499853-----865001-4578873
Q gi|254780601|r  245 KNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT-----DVAARG-IDLPDLE  314 (573)
Q Consensus       245 ~~~ivF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T-----DvaaRG-iDi~~v~  314 (573)
T Consensus       160 p~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~~~~~q---~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~  236 (472)
T PRK01297        160 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE  236 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH---HHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCE
T ss_conf             5299987999999999999999746279769999789887999---9998558998899797999987434825425522


Q ss_pred             EEEE
Q ss_conf             3897
Q gi|254780601|r  315 LVIH  318 (573)
Q Consensus       315 ~Vin  318 (573)
T Consensus       237 ~lVl  240 (472)
T PRK01297        237 VMVL  240 (472)
T ss_pred             EEEE
T ss_conf             9999