HHsearch alignment for GI: 254780601 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00 E-value=0 Score=794.86 Aligned_cols=372 Identities=31% Similarity=0.487 Sum_probs=352.3
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212-25568827999
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDR-FSPASAPLALA 79 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~-~~~~~~~~~li 79 (573)
T Consensus 10 SF~~LgL~~~Ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLI 89 (574)
T PRK04537 10 TFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (574)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 18666989999999997799989999999999995799889984898889999999999999837443457789961999
Q ss_pred ECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHC-CCCCCCCCEEEEEECCC
Q ss_conf 84998999999999999854469879999889987999996128975998223101332100-01224643189996131
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEAD 158 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~-~~l~l~~v~~lVlDEaD 158 (573)
T Consensus 90 LvPTRELA~QI~~~~~~l~~~~~lr~~~l~GG~~~~~q~~~L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD 169 (574)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (574)
T ss_pred ECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCH
T ss_conf 77989999999999999864589779999799668899998735999899898999999981798653331589962732
Q ss_pred CCCCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHH
Q ss_conf 100100123578887521433--422563111122200111121012333323332325665200000000000245542
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKK--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV 236 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~--~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~ 236 (573)
T Consensus 170 ~LLd~gF~~di~~IL~~lP~~~~rQ~iLfSATl~~~V~~la~~~l~~P~~i~v~~~~~~~~~I~Q~~~~~~~~~K~~~L~ 249 (574)
T PRK04537 170 RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLL 249 (574)
T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 65428779999999996665568558999832777999999997799869996566545776038999777789999999
Q ss_pred HCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 00102356416775130233456555554226663010489999999999866544881499853865001457887338
Q gi|254780601|r 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316 (573)
Q Consensus 237 ~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~V 316 (573)
T Consensus 250 ~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaTDVAARGIDIp~V~~V 329 (574)
T PRK04537 250 GLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYV 329 (574)
T ss_pred HHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEE
T ss_conf 99972677651153341899999999999779968997099999999999999976999799773500233571469979
Q ss_pred EEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9705887478999860301037888602564059999999999998506641056899
Q gi|254780601|r 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 (573)
Q Consensus 317 in~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps 374 (573)
T Consensus 330 INYDlP~~~e~YVHRIGRTGRaGr~G~AITfv~~~e~~~l~~IE~~i~~~ip~~~~~~ 387 (574)
T PRK04537 330 YNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTA 387 (574)
T ss_pred EEECCCCCHHHHHCCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 9957969821411245350378993359998777998999999998678788866544