HHsearch alignment for GI: 254780601 and conserved domain: PRK05416

Probab=92.27  E-value=0.88  Score=24.45  Aligned_cols=237  Identities=18%  Similarity=0.182  Sum_probs=108.9

Q ss_pred             EEEECCCCCCHHHHHH--------------HHHHHHHHCCCCCCCCCCCCEEEEEC-CCHHHHHHHHHHHHHHHHHCCCE
Q ss_conf             9999289874689999--------------99999861042122556882799984-99899999999999985446987
Q gi|254780601|r   40 VLVSAQTGSGKTVAFG--------------LALASTLLAENDRFSPASAPLALAIA-PTRELAVQVGRELEWLYAKTGVV  104 (573)
Q Consensus        40 ~i~~a~TGsGKT~af~--------------lp~l~~l~~~~~~~~~~~~~~~lil~-PTrELa~Qv~~~~~~l~~~~~~~  104 (573)
T Consensus         9 viVTGlSGAGKStAl~~LEDlGy~ciDNlP~~Ll~~l~~~~~~-~~~~~~lAv~iD~R~~~~~~~l~~~~~~l~~-~~~~   86 (292)
T PRK05416          9 VIVTGLSGAGKSVALRALEDLGYYCVDNLPPSLLPKLVELLAQ-SGGIDKVAVVIDVRSRPFFLDLPEALDELRE-RGID   86 (292)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-CCCC
T ss_conf             9996899787999999998179447868888999999999724-7887706999824665447789999999985-7995


Q ss_pred             EEEEECCCCHHHHHH--HHCCCCEEEEECCCCHHHHHHCCCCC---CCCCEEEEEECCCCCCCC-HHHHHHHHHHHHCCC
Q ss_conf             999988998799999--61289759982231013321000122---464318999613110010-012357888752143
Q gi|254780601|r  105 VAVCIGGVSVHRERR--DLQNGAHIVVGTPGRLCDHIRGKGLN---ISHLKAVVLDEADEMLDL-GFRDDIEFILDSSPK  178 (573)
Q Consensus       105 v~~~~gg~~~~~q~~--~l~~~~~iiv~TPgrl~d~~~~~~l~---l~~v~~lVlDEaD~ml~~-gf~~~i~~i~~~~p~  178 (573)
T Consensus        87 ~~ilFLdA~~~~LlrRy~eTRR~HPL~~~~~~L~eaI~~Er~~L~~ir~~Ad~vIDTS~--l~~~~Lr~~i~~~~~~~~~  164 (292)
T PRK05416         87 VRVLFLDASDEVLIRRYSETRRRHPLSGDGGSLLEAIELERELLAPLRERADLVIDTSE--LSVHQLRERIRERFGGEGR  164 (292)
T ss_pred             EEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCC--CCHHHHHHHHHHHHCCCCC
T ss_conf             59999978869999988750689998889999899999999999999974028974799--9999999999998655688


Q ss_pred             CC--CEEEEECC----CCCCCHH-HHHHHCCCCCCCCCCCCCCCC-CCCCHHCCCCCCCH----HH-HHHHHCCC----C
Q ss_conf             34--22563111----1222001-111210123333233323256-65200000000000----24-55420010----2
Q gi|254780601|r  179 KR--RMLMFSAT----ISPAITT-LAKNYQKDAVRVNIASENRQH-SDIDYRAVLVALSD----RD-NAIVNILR----Y  241 (573)
Q Consensus       179 ~~--q~~l~SAT----~~~~i~~-l~~~~~~~p~~i~~~~~~~~~-~~i~~~~~~v~~~~----k~-~~l~~ll~----~  241 (573)
T Consensus       165 ~~~l~i~i~SFGfK~GiP~dAD~VfDvRfLpNP~y~~~Lr~~tG~D~~V~~yv~~~~~~~~f~~~i~~~l~~~lp~y~~e  244 (292)
T PRK05416        165 ERELTVTVESFGFKYGIPLDADLVFDVRFLPNPHYVPELRPLTGLDKPVADYVLAQPEVEEFLDQIRDLLEFWLPGYRRE  244 (292)
T ss_pred             CCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88559999960245689975311455135789988644356899985899999749229999999999999999999984


Q ss_pred             CCCCEEEEE-C-----CCHHHHHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf             356416775-1-----302334565555542266630104899999
Q gi|254780601|r  242 HGAKNAIVF-C-----STRASVSRFTKVLAEHLFQVVALSGELSQQ  281 (573)
Q Consensus       242 ~~~~~~ivF-~-----~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~  281 (573)
T Consensus       245 gk~yltIaiGCTGG~HRSV~~ae~l~~~l~~-~~~v~v~HRdl~~~  289 (292)
T PRK05416        245 GKSYLTIAIGCTGGQHRSVAIAERLAERLRA-GYNVQVRHRDLERR  289 (292)
T ss_pred             CCCEEEEEECCCCCCCCHHHHHHHHHHHHHC-CCCCEEECCCCCCC
T ss_conf             9977999975889871799999999999857-99727873667876