HHsearch alignment for GI: 254780601 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=99.84 E-value=1e-17 Score=138.35 Aligned_cols=323 Identities=22% Similarity=0.275 Sum_probs=188.2
Q ss_pred CCHHHHHHHHHCCCC---------------------CCCHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 988999999978798---------------------7898999999999759---9699992898746899999999986
Q gi|254780601|r 7 IPQVIGEALSERGYV---------------------NLTSVQEAILNPDLRE---KDVLVSAQTGSGKTVAFGLALASTL 62 (573)
Q Consensus 7 l~~~l~~~l~~~g~~---------------------~pt~iQ~~~ip~~l~g---~d~i~~a~TGsGKT~af~lp~l~~l 62 (573)
T Consensus 132 ~s~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~eQ~~a~~~i~~~~~~~~~LL~GvTGSGKTevY-l~li~~~ 210 (699)
T PRK05580 132 VSASVLKGLAKKGLIEIVERPPLRLRDPPDPDTEPPTLNEEQAAALAAIRAAGGFSAFLLDGVTGSGKTEVY-LQAIAEA 210 (699)
T ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH-HHHHHHH
T ss_conf 988999999978971675321456543344456787889999999999985588871787478986079999-9999999
Q ss_pred HCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH---HHHH-CCCCEEEEECCCCHHHH
Q ss_conf 1042122556882799984998999999999999854469879999889987999---9961-28975998223101332
Q gi|254780601|r 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE---RRDL-QNGAHIVVGTPGRLCDH 138 (573)
Q Consensus 63 ~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q---~~~l-~~~~~iiv~TPgrl~d~ 138 (573)
T Consensus 211 l~~--------GkqvLiLvPEI~lt~q~~~rl~~~---fg~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAvF-- 277 (699)
T PRK05580 211 LAQ--------GKQALVLVPEIALTPQLLARFRAR---FGARVAVLHSGLSDGERYRAWLAALRGEARVVIGTRSALF-- 277 (699)
T ss_pred HHC--------CCCEEEEECCHHHHHHHHHHHHHH---HCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEE--
T ss_conf 973--------997899917678789999999987---0995799648898579999999997699719997360110--
Q ss_pred HHCCCCCCCCCEEEEEEC-CCCCCCC--HHH---HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH-----------HHC
Q ss_conf 100012246431899961-3110010--012---35788875214334225631111222001111-----------210
Q gi|254780601|r 139 IRGKGLNISHLKAVVLDE-ADEMLDL--GFR---DDIEFILDSSPKKRRMLMFSATISPAITTLAK-----------NYQ 201 (573)
Q Consensus 139 ~~~~~l~l~~v~~lVlDE-aD~ml~~--gf~---~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~-----------~~~ 201 (573)
T Consensus 278 -----aP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~R-a~~~~~~liLgSaTPSlEs~~~~~~g~~~~~~l~~r~~ 351 (699)
T PRK05580 278 -----APFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLR-AKQEGCPVVLGSATPSLESLANAESGKYHLLRLTRRAG 351 (699)
T ss_pred -----CCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHH-HHHHCCCEEECCCCCCHHHHHHHHCCCCEEECCCCCCC
T ss_conf -----657898489997365454446668761199999999-99849988961689999999999759976644653223
Q ss_pred CC--CC--CCCCCCCCCCC-CCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECCC-----------------------
Q ss_conf 12--33--33233323256-6520000000000024554200102356416775130-----------------------
Q gi|254780601|r 202 KD--AV--RVNIASENRQH-SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCST----------------------- 253 (573)
Q Consensus 202 ~~--p~--~i~~~~~~~~~-~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~t----------------------- 253 (573)
T Consensus 352 ~~~~P~v~ivDm~~~~~~~~~~ls~~--------l~~~i~~~L--~~g~qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~ 421 (699)
T PRK05580 352 AAALPRVEIIDMREEPLERGAGLSPP--------LLEAIREAL--ERGEQVLLFLNRRGYAPFLLCRDCGWVARCPHCDG 421 (699)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCHH--------HHHHHHHHH--HCCCEEEEEECCCCCCCEEECHHCCCEEECCCCCC
T ss_conf 47898379335421410025754699--------999999999--73884799954775225147453199456567898
Q ss_pred -------------------------------------HHHHHHHHHHHHHC--CCCCCCCCCCC--CHHHHHHHHHHHHC
Q ss_conf -------------------------------------23345655555422--66630104899--99999999866544
Q gi|254780601|r 254 -------------------------------------RASVSRFTKVLAEH--LFQVVALSGEL--SQQERSNALQMMRD 292 (573)
Q Consensus 254 -------------------------------------~~~~~~l~~~L~~~--g~~~~~lhg~~--~q~~R~~~~~~fr~ 292 (573)
T Consensus 422 ~L~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cgs~~l~~~g~Gteri~eel~~~FP~~~i~r~d~d~~~~~~~~~~~~~~~~~ 501 (699)
T PRK05580 422 PLTLHRAGRRLRCHHCGYQEPIPRACPECGSTDLRAVGVGTERTEEELARLFPGARVLRIDRDTTRRKGALEQLLEDFAR 501 (699)
T ss_pred EEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHC
T ss_conf 63420689833226468836575546567997524111685999999997789998899847556786316889999746
Q ss_pred CCEEEEEECCCCCCCCCCCCCCEEEEECC------CC--CHH----HHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHH
Q ss_conf 88149985386500145788733897058------87--478----999860301037888602564059999999999
Q gi|254780601|r 293 GRARVCIATDVAARGIDLPDLELVIHAEL------SS--NPE----NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERL 359 (573)
Q Consensus 293 g~~~vLV~TDvaaRGiDi~~v~~Vin~d~------P~--~~~----~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i 359 (573)
T Consensus 502 ~~~dIlvGTqmiakG~df~~v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagragr~~~~g~viiQt~~p~~~~~~~l 580 (699)
T PRK05580 502 GEADILVGTQMLAKGHDFPNVTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGRAGRAEKPGEVLIQTYEPEHPLLQAL 580 (699)
T ss_pred CCCCEEECCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHH
T ss_conf 8987897773345567777626998732265354888347999999999998765567889879999379998999999