HHsearch alignment for GI: 254780601 and conserved domain: PRK06731
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=95.41 E-value=0.22 Score=28.47 Aligned_cols=127 Identities=13% Similarity=0.207 Sum_probs=62.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 99992898746899999999986104212255688279998499899999999999985446987999988998799999
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~ 119 (573)
T Consensus 78 I~lvG~~G~GKTTT~A-KLA~~~~~~~-------~kV~lia~DtyR~aA--~eQLk~~a~~l~v~~~~~~~~~~~~~~~~ 147 (270)
T PRK06731 78 IALIGPTGVGKTTTLA-KMAWQFHGKK-------KTVGFITTDHSRIGT--VQQLQDYVKTIGFEVIAVRDEAAMTRALT 147 (270)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHCC-------CEEEEEEECCCCHHH--HHHHHHHHHHHCCCEECCCCHHHHHHHHH
T ss_conf 9998889898899999-9999998679-------908999838888889--99999999981995354588789999999
Q ss_pred HHC--CCCE-EEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCHH
Q ss_conf 612--8975-9982231013321000122464318999613110010012357888752143342256311112-22001
Q gi|254780601|r 120 DLQ--NGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS-PAITT 195 (573)
Q Consensus 120 ~l~--~~~~-iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~-~~i~~ 195 (573)
T Consensus 148 ~~~~~~~~DvilIDTAGR~~~-----------------d~-------~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~ 203 (270)
T PRK06731 148 YFKEEARVDYILIDTAGKNYR-----------------AS-------ETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred HHHHHCCCCEEEEECCCCCCC-----------------CH-------HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHH
T ss_conf 999976999999979998714-----------------69-------999999998606389879999868777699999
Q ss_pred HHHHH
Q ss_conf 11121
Q gi|254780601|r 196 LAKNY 200 (573)
Q Consensus 196 l~~~~ 200 (573)
T Consensus 204 ~~~~f 208 (270)
T PRK06731 204 IITNF 208 (270)
T ss_pred HHHHH
T ss_conf 99980