HHsearch alignment for GI: 254780601 and conserved domain: PRK07246
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=99.70 E-value=4.5e-14 Score=113.79 Aligned_cols=289 Identities=17% Similarity=0.219 Sum_probs=159.6
Q ss_pred HHHCCCCCCCHHHHHHHHH----HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf 9978798789899999999----975996999928987468999999999861042122556882799984998999999
Q gi|254780601|r 15 LSERGYVNLTSVQEAILNP----DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV 90 (573)
Q Consensus 15 l~~~g~~~pt~iQ~~~ip~----~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv 90 (573)
T Consensus 239 ~~~~g~E-~R~~Q~~Ma~~V~~al~~~~~l~IEAgTGtGKTlaYLlPaia~---~~-------~~~vVIST~T~~LQeQL 307 (820)
T PRK07246 239 IALLGLE-ERPKQEQFAQLVDEDYHDGVASFIEAQTGIGKTYGYLLPLLAQ---SD-------QNQIIVSVPTKLLQDQI 307 (820)
T ss_pred CCCCCCC-CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH---CC-------CCEEEEEECCHHHHHHH
T ss_conf 2567986-1889999999999998058838998899964799999999984---37-------98399990869999999
Q ss_pred H-HHHHHHHHHCCCEEEEEECCCCH---------------HH-------HH-------------------------HHH-
Q ss_conf 9-99999854469879999889987---------------99-------99-------------------------961-
Q gi|254780601|r 91 G-RELEWLYAKTGVVVAVCIGGVSV---------------HR-------ER-------------------------RDL- 121 (573)
Q Consensus 91 ~-~~~~~l~~~~~~~v~~~~gg~~~---------------~~-------q~-------------------------~~l- 121 (573)
T Consensus 308 ~~kDlp~L~~~l~~~~~~lKGr~nYLcL~~~~~~l~~~d~~~~~~~~~~~ll~Wl~~T~tGD~dEL~~~~~~~~~~~~i~ 387 (820)
T PRK07246 308 MAGEVKAIQEQFHIACHSLKGPQNYLKLDSFYDSLQQNDQNRLVNRYKMQLLVWLLETETGDLDEIKQKQRYAAYFDQLK 387 (820)
T ss_pred HHHHHHHHHHHHCCCCCEEECHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHCC
T ss_conf 99789999998487503365678616488899986045302354589999999972689889777235410357877506
Q ss_pred -----------------------CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC---------------
Q ss_conf -----------------------289759982231013321000122464318999613110010---------------
Q gi|254780601|r 122 -----------------------QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL--------------- 163 (573)
Q Consensus 122 -----------------------~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~--------------- 163 (573)
T Consensus 388 ~~~~l~~~~~~~~~cf~~~ar~~a~~AdivI~NHalLl~~~~~~~-~~~~~~~lIiDEAH~L~~~~~~~~~~~~~~~~~l 466 (820)
T PRK07246 388 HDGDLKQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFVRNKVLVFDEAQKLMLQLEQLSRHQLNITVFL 466 (820)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECHHHHHHHHHHCC-CCCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHH
T ss_conf 557788789876405999999998616589846799999874144-5776887999881427999999999882699999
Q ss_pred ----------------------HH------------------HHHHHH------------------HH------------
Q ss_conf ----------------------01------------------235788------------------87------------
Q gi|254780601|r 164 ----------------------GF------------------RDDIEF------------------IL------------ 173 (573)
Q Consensus 164 ----------------------gf------------------~~~i~~------------------i~------------ 173 (573)
T Consensus 467 ~~l~~~l~~~~~~l~~~lle~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~el~~~~~~~l~~~~~~~~~~~wl~~~ 546 (820)
T PRK07246 467 QTIQKKLSNPLPLLEKRLLESISFELGQLSEDFYQNKSHQLAHDWLSRLAQYASELEGADYQELQAFFATSDGDYWLESE 546 (820)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 99999985416589999999999999999999986065555789999999999998899999999986073676799843
Q ss_pred ---------------------HHCCCCCCEEEEECCCC--CCCHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHCCCCC--
Q ss_conf ---------------------52143342256311112--2200111121-012333323332325665200000000--
Q gi|254780601|r 174 ---------------------DSSPKKRRMLMFSATIS--PAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVA-- 227 (573)
Q Consensus 174 ---------------------~~~p~~~q~~l~SAT~~--~~i~~l~~~~-~~~p~~i~~~~~~~~~~~i~~~~~~v~-- 227 (573)
T Consensus 547 ~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~i~tSATLtv~~~f-~~~~~lGl~~~~~~~lp~~-----~~~~~~l~v~~d 620 (820)
T PRK07246 547 KQEEKRVTYLNSASKAFIHFSQLLPETVKTYFVSATLTISPEV-SLADLLGFEEYLYHKIEKD-----KKQDQLVLVDQE 620 (820)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECEECCCCCC-CHHHHHCCCCCCCCCCCCC-----CHHCCEEEECCC
T ss_conf 5666523786246235899998750069099990450609966-3888719960120438998-----343378997589
Q ss_pred -----C---CHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf -----0---002455420010--235641677513023345655555422666301048999999999986654488149
Q gi|254780601|r 228 -----L---SDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297 (573)
Q Consensus 228 -----~---~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~v 297 (573)
T Consensus 621 ~P~~~~~~~~~y~~~la~~i~~l~~~~g~~LVLFTS~~~l~~v~~~L~~~~~~~L~-Qg--~~gs~~~l~~rF~~~~~si 697 (820)
T PRK07246 621 MPIVTEVSDEIYAEAIAKRLESLKQEGQPILVLFNSKKHLLAVSDYLDQWQVSHLA-QE--KNGTAYNIKKRFDRGEQTI 697 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCEEE-EC--CCCCHHHHHHHHHHCCCEE
T ss_conf 99889998599999999999999974999999953099999999998537997788-67--9767999999998489969
Q ss_pred EEECCCCCCCCCCCC--CCEEEEECCCCC
Q ss_conf 985386500145788--733897058874
Q gi|254780601|r 298 CIATDVAARGIDLPD--LELVIHAELSSN 324 (573)
Q Consensus 298 LV~TDvaaRGiDi~~--v~~Vin~d~P~~ 324 (573)
T Consensus 698 LlGt~SFWEGVDlpG~~L~~vVI~kLPF~ 726 (820)
T PRK07246 698 LLGLGSFWEGVDFIQADRMIEVITRLPFD 726 (820)
T ss_pred EEECCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf 99766764664489987799998869999