HHsearch alignment for GI: 254780601 and conserved domain: PRK07246

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=99.70  E-value=4.5e-14  Score=113.79  Aligned_cols=289  Identities=17%  Similarity=0.219  Sum_probs=159.6

Q ss_pred             HHHCCCCCCCHHHHHHHHH----HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHH
Q ss_conf             9978798789899999999----975996999928987468999999999861042122556882799984998999999
Q gi|254780601|r   15 LSERGYVNLTSVQEAILNP----DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQV   90 (573)
Q Consensus        15 l~~~g~~~pt~iQ~~~ip~----~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv   90 (573)
T Consensus       239 ~~~~g~E-~R~~Q~~Ma~~V~~al~~~~~l~IEAgTGtGKTlaYLlPaia~---~~-------~~~vVIST~T~~LQeQL  307 (820)
T PRK07246        239 IALLGLE-ERPKQEQFAQLVDEDYHDGVASFIEAQTGIGKTYGYLLPLLAQ---SD-------QNQIIVSVPTKLLQDQI  307 (820)
T ss_pred             CCCCCCC-CCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHH---CC-------CCEEEEEECCHHHHHHH
T ss_conf             2567986-1889999999999998058838998899964799999999984---37-------98399990869999999


Q ss_pred             H-HHHHHHHHHCCCEEEEEECCCCH---------------HH-------HH-------------------------HHH-
Q ss_conf             9-99999854469879999889987---------------99-------99-------------------------961-
Q gi|254780601|r   91 G-RELEWLYAKTGVVVAVCIGGVSV---------------HR-------ER-------------------------RDL-  121 (573)
Q Consensus        91 ~-~~~~~l~~~~~~~v~~~~gg~~~---------------~~-------q~-------------------------~~l-  121 (573)
T Consensus       308 ~~kDlp~L~~~l~~~~~~lKGr~nYLcL~~~~~~l~~~d~~~~~~~~~~~ll~Wl~~T~tGD~dEL~~~~~~~~~~~~i~  387 (820)
T PRK07246        308 MAGEVKAIQEQFHIACHSLKGPQNYLKLDSFYDSLQQNDQNRLVNRYKMQLLVWLLETETGDLDEIKQKQRYAAYFDQLK  387 (820)
T ss_pred             HHHHHHHHHHHHCCCCCEEECHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHCC
T ss_conf             99789999998487503365678616488899986045302354589999999972689889777235410357877506


Q ss_pred             -----------------------CCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC---------------
Q ss_conf             -----------------------289759982231013321000122464318999613110010---------------
Q gi|254780601|r  122 -----------------------QNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL---------------  163 (573)
Q Consensus       122 -----------------------~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~---------------  163 (573)
T Consensus       388 ~~~~l~~~~~~~~~cf~~~ar~~a~~AdivI~NHalLl~~~~~~~-~~~~~~~lIiDEAH~L~~~~~~~~~~~~~~~~~l  466 (820)
T PRK07246        388 HDGDLKQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFVRNKVLVFDEAQKLMLQLEQLSRHQLNITVFL  466 (820)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECHHHHHHHHHHCC-CCCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHH
T ss_conf             557788789876405999999998616589846799999874144-5776887999881427999999999882699999


Q ss_pred             ----------------------HH------------------HHHHHH------------------HH------------
Q ss_conf             ----------------------01------------------235788------------------87------------
Q gi|254780601|r  164 ----------------------GF------------------RDDIEF------------------IL------------  173 (573)
Q Consensus       164 ----------------------gf------------------~~~i~~------------------i~------------  173 (573)
T Consensus       467 ~~l~~~l~~~~~~l~~~lle~l~~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~el~~~~~~~l~~~~~~~~~~~wl~~~  546 (820)
T PRK07246        467 QTIQKKLSNPLPLLEKRLLESISFELGQLSEDFYQNKSHQLAHDWLSRLAQYASELEGADYQELQAFFATSDGDYWLESE  546 (820)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             99999985416589999999999999999999986065555789999999999998899999999986073676799843


Q ss_pred             ---------------------HHCCCCCCEEEEECCCC--CCCHHHHHHH-CCCCCCCCCCCCCCCCCCCCHHCCCCC--
Q ss_conf             ---------------------52143342256311112--2200111121-012333323332325665200000000--
Q gi|254780601|r  174 ---------------------DSSPKKRRMLMFSATIS--PAITTLAKNY-QKDAVRVNIASENRQHSDIDYRAVLVA--  227 (573)
Q Consensus       174 ---------------------~~~p~~~q~~l~SAT~~--~~i~~l~~~~-~~~p~~i~~~~~~~~~~~i~~~~~~v~--  227 (573)
T Consensus       547 ~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~i~tSATLtv~~~f-~~~~~lGl~~~~~~~lp~~-----~~~~~~l~v~~d  620 (820)
T PRK07246        547 KQEEKRVTYLNSASKAFIHFSQLLPETVKTYFVSATLTISPEV-SLADLLGFEEYLYHKIEKD-----KKQDQLVLVDQE  620 (820)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECEECCCCCC-CHHHHHCCCCCCCCCCCCC-----CHHCCEEEECCC
T ss_conf             5666523786246235899998750069099990450609966-3888719960120438998-----343378997589


Q ss_pred             -----C---CHHHHHHHHCCC--CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf             -----0---002455420010--235641677513023345655555422666301048999999999986654488149
Q gi|254780601|r  228 -----L---SDRDNAIVNILR--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV  297 (573)
Q Consensus       228 -----~---~~k~~~l~~ll~--~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~v  297 (573)
T Consensus       621 ~P~~~~~~~~~y~~~la~~i~~l~~~~g~~LVLFTS~~~l~~v~~~L~~~~~~~L~-Qg--~~gs~~~l~~rF~~~~~si  697 (820)
T PRK07246        621 MPIVTEVSDEIYAEAIAKRLESLKQEGQPILVLFNSKKHLLAVSDYLDQWQVSHLA-QE--KNGTAYNIKKRFDRGEQTI  697 (820)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCEEE-EC--CCCCHHHHHHHHHHCCCEE
T ss_conf             99889998599999999999999974999999953099999999998537997788-67--9767999999998489969


Q ss_pred             EEECCCCCCCCCCCC--CCEEEEECCCCC
Q ss_conf             985386500145788--733897058874
Q gi|254780601|r  298 CIATDVAARGIDLPD--LELVIHAELSSN  324 (573)
Q Consensus       298 LV~TDvaaRGiDi~~--v~~Vin~d~P~~  324 (573)
T Consensus       698 LlGt~SFWEGVDlpG~~L~~vVI~kLPF~  726 (820)
T PRK07246        698 LLGLGSFWEGVDFIQADRMIEVITRLPFD  726 (820)
T ss_pred             EEECCCCCCCCCCCCCCEEEEEEEECCCC
T ss_conf             99766764664489987799998869999