HHsearch alignment for GI: 254780601 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=90.35 E-value=0.3 Score=27.54 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHCCCCCCCHHHHHHHHH-------HHCCCCEEEECCCCCCHHH
Q ss_conf 999978798789899999999-------9759969999289874689
Q gi|254780601|r 13 EALSERGYVNLTSVQEAILNP-------DLREKDVLVSAQTGSGKTV 52 (573)
Q Consensus 13 ~~l~~~g~~~pt~iQ~~~ip~-------~l~g~d~i~~a~TGsGKT~ 52 (573)
T Consensus 75 ktLe~fDf~~~p~i~~~~i~~L~~~~~fi~~~~Nvil~Gp~GtGKTh 121 (269)
T PRK08181 75 KTLDSFDFEAVPMISKAQVMALAAGDSWLAKGANLLLFGPPGGGKSH 121 (269)
T ss_pred CCHHHCCCCCCCCCCHHHHHHHHCCCHHHHCCCEEEEECCCCCCHHH
T ss_conf 88654785568998999999996567588648708998999987889