HHsearch alignment for GI: 254780601 and conserved domain: PRK09200
>PRK09200 preprotein translocase subunit SecA; Reviewed.
Probab=99.74 E-value=1.9e-14 Score=116.29 Aligned_cols=323 Identities=20% Similarity=0.240 Sum_probs=200.5
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 74 ~lg~-~~~dvQl~g~~~l~~g~--iaEm~TGEGKTL~a~l~~~l~al~g---------~~vhvvTvNdYLA~RDa~~m~~ 141 (799)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG---------KGVHLITTNDYLAKRDFEEMGQ 141 (799)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCCEEEECCHHHHHHHHHHHHH
T ss_conf 6599-76568999899984695--2455178858999999999997469---------9818980055777887999999
Q ss_pred HHHHCCCEEEEEECCCCHH---HHHHHHCCCCEEEEECCCCH-----HHHHH--CCCCCCCCCEEEEEECCCCCC-CC--
Q ss_conf 8544698799998899879---99996128975998223101-----33210--001224643189996131100-10--
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVH---RERRDLQNGAHIVVGTPGRL-----CDHIR--GKGLNISHLKAVVLDEADEML-DL-- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~---~q~~~l~~~~~iiv~TPgrl-----~d~~~--~~~l~l~~v~~lVlDEaD~ml-~~-- 163 (573)
T Consensus 142 iy~~lGl~vg~~~~~~~~~~~~~~~r~~~Y~~di~Y~tn~e~gfDyLrDn~~~~~~~~v~r~~~~aivDEvDsiLiDeAr 221 (799)
T PRK09200 142 VYEFLGLTVGLNFSDIDDYEYQAGEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVLRPLNYAIIDEVDSILLDEAQ 221 (799)
T ss_pred HHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCCCEECCCCCCHHHHHCCCCCCCHHHCCCCCCCEEEEECHHHHHHHCCC
T ss_conf 99982965833368886443797999988747722235654003453012015676525778966898532667774135
Q ss_pred -------------HHHHHHHHHHHHCCC---------CCCEEEEECCC-----------------CCCCH----HHHHH-
Q ss_conf -------------012357888752143---------34225631111-----------------22200----11112-
Q gi|254780601|r 164 -------------GFRDDIEFILDSSPK---------KRRMLMFSATI-----------------SPAIT----TLAKN- 199 (573)
Q Consensus 164 -------------gf~~~i~~i~~~~p~---------~~q~~l~SAT~-----------------~~~i~----~l~~~- 199 (573)
T Consensus 222 tPliisg~~~~~~~~~~~~~~~~~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~ 301 (799)
T PRK09200 222 TPLVISGAPRVQSNLYHIAAEFVKTLEEDVDYEFDKEKKEVWLTDQGIEKAESYFGIDNLYSEEHQVLVRHIILALRAHY 301 (799)
T ss_pred CCCEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 64121489876527999999998526774437851100677624457999999709975476557789999999999999
Q ss_pred -HCCCCC------------------------------------CCCCCCCCCCCCCCCH-HCC-----------------
Q ss_conf -101233------------------------------------3323332325665200-000-----------------
Q gi|254780601|r 200 -YQKDAV------------------------------------RVNIASENRQHSDIDY-RAV----------------- 224 (573)
Q Consensus 200 -~~~~p~------------------------------------~i~~~~~~~~~~~i~~-~~~----------------- 224 (573)
T Consensus 302 ~~~~d~~YiV~~~~v~ivDe~TGR~~~gr~~s~GlhQaiEaKE~v~i~~e~~t~a~it~Qn~Fr~y~kl~GmTGTa~~~~ 381 (799)
T PRK09200 302 LFERDVDYIVYDGEIVLIDRFTGRVLPGRKLQDGLHQAIEAKEGVEVTEENRTMASITIQNLFRMFPKLSGMTGTAKTEE 381 (799)
T ss_pred HHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHCCHHCCCCCCCHHHH
T ss_conf 98458627986681899878988748998266577999998708987888731266448989864723125767609899
Q ss_pred -----------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf -----------------------------000000245542001-023-5641677513023345655555422666301
Q gi|254780601|r 225 -----------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVA 273 (573)
Q Consensus 225 -----------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~ 273 (573)
T Consensus 382 ~Ef~~iY~l~v~~iPtn~p~~r~d~~d~v~~t~~~k~~av~~~v~~~~~~g~pvLvgt~sv~~Se~~s~~L~~~~i~h~v 461 (799)
T PRK09200 382 KEFFEVYNMEVVQIPTNRPIIRIDYPDKVFATVDEKYKAVIEEVKERHETGRPVLIGTGSIEQSEYFSKLLFEAGIPHNL 461 (799)
T ss_pred HHHHHHHCCCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999868776988999985445474301089999999999999999857998899838579999999999865764332
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC--------CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 04899999999998665448814998538650014578--------8733897058874789998603010378886025
Q gi|254780601|r 274 LSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP--------DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345 (573)
Q Consensus 274 lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~--------~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai 345 (573)
T Consensus 462 LnAk--~~~~Ea~Iia~AG~~g~vTiaTnMAGRGtDI~l~~~v~~~GGL~Vigterhes~Rid~QlrGR~gRQGdpG~s~ 539 (799)
T PRK09200 462 LNAK--NAAQEAQIIAEAGQKGAVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ 539 (799)
T ss_pred CCCC--CHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 0532--17789999982789994898454558986953384535438817740344514667767516534579998548
Q ss_pred EEECHHHH
Q ss_conf 64059999
Q gi|254780601|r 346 FVIPQNMQ 353 (573)
Q Consensus 346 ~l~~~~e~ 353 (573)
T Consensus 540 f~~sled~ 547 (799)
T PRK09200 540 FFISLEDD 547 (799)
T ss_pred EEEECCHH
T ss_conf 99851478