HHsearch alignment for GI: 254780601 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=100.00 E-value=0 Score=809.89 Aligned_cols=372 Identities=30% Similarity=0.483 Sum_probs=355.5
Q ss_pred CCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 777--998899999997879878989999999997599699992898746899999999986104212255688279998
Q gi|254780601|r 3 IFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 (573)
Q Consensus 3 ~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil 80 (573)
T Consensus 2 sF~~lgL~~~ll~aL~~~G~~~PTpIQ~~aIP~iL~GrDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLIL 81 (457)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (457)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf 37334989999999997799999999999999997799889988981189999999999998636765445688249997
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 49989999999999998544698799998899879999961289759982231013321000122464318999613110
Q gi|254780601|r 81 APTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM 160 (573)
Q Consensus 81 ~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m 160 (573)
T Consensus 82 ~PTRELA~Qi~~~~~~l~~~~~~~~~~~~Gg~~~~~q~~~l~~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVlDEAD~m 161 (457)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (457)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEECCHHH
T ss_conf 68799999999999974255894599997997775999986189998998928889888626776575239998370565
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHCCC
Q ss_conf 01001235788875214334225631111222001111210123333233323256652000000000002455420010
Q gi|254780601|r 161 LDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 (573)
Q Consensus 161 l~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~ll~ 240 (573)
T Consensus 162 Ld~gF~~di~~Il~~lp~~rQ~llfSAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~v~~~~k~~~L~~ll~ 241 (457)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIG 241 (457)
T ss_pred HCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHH
T ss_conf 15665366899986387652689995048889999999976898899963676656130489999566789999999986
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEEC
Q ss_conf 23564167751302334565555542266630104899999999998665448814998538650014578873389705
Q gi|254780601|r 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE 320 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d 320 (573)
T Consensus 242 ~~~~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~V~~VInyD 321 (457)
T PRK10590 242 KGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYE 321 (457)
T ss_pred HCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf 15866335884119999999999855699823232478999999999999869982999577011556635688799938
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 887478999860301037888602564059999999999998506641056899
Q gi|254780601|r 321 LSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPS 374 (573)
Q Consensus 321 ~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps 374 (573)
T Consensus 322 ~P~~~e~YvHRiGRTGRaG~~G~ait~v~~~e~~~~~~ie~~~~~~~~~~~~~~ 375 (457)
T PRK10590 322 LPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPG 375 (457)
T ss_pred CCCCHHHEECCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999744500226706058995369998668999999999999779887403788