HHsearch alignment for GI: 254780601 and conserved domain: PRK10689

>PRK10689 transcription-repair coupling factor; Provisional.
Probab=96.28  E-value=0.098  Score=30.84  Aligned_cols=52  Identities=15%  Similarity=0.181  Sum_probs=32.3

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf             5996999928987468999999999861042122556882799984998999999999999854
Q gi|254780601|r   36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA   99 (573)
Q Consensus        36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~   99 (573)
T Consensus        13 aG~~~~l~gL~GSA~al~--lA~l~~---~~------~~-p~lvV~~d~~~A~~l~~dL~~f~~   64 (1148)
T PRK10689         13 AGDQRQLGELTGAACATL--VAEIAE---RH------AG-PVVLIAPDMQNALRLHDEISQFTD   64 (1148)
T ss_pred             CCCEEECCCCCCHHHHHH--HHHHHH---HH------CC-CEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             997126778860699999--999999---70------99-889991999999999999985489