HHsearch alignment for GI: 254780601 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=96.28 E-value=0.098 Score=30.84 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 5996999928987468999999999861042122556882799984998999999999999854
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~ 99 (573)
T Consensus 13 aG~~~~l~gL~GSA~al~--lA~l~~---~~------~~-p~lvV~~d~~~A~~l~~dL~~f~~ 64 (1148)
T PRK10689 13 AGDQRQLGELTGAACATL--VAEIAE---RH------AG-PVVLIAPDMQNALRLHDEISQFTD 64 (1148)
T ss_pred CCCEEECCCCCCHHHHHH--HHHHHH---HH------CC-CEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 997126778860699999--999999---70------99-889991999999999999985489