HHsearch alignment for GI: 254780601 and conserved domain: PRK10875
>PRK10875 recD exonuclease V subunit alpha; Provisional.
Probab=97.88 E-value=0.00092 Score=44.49 Aligned_cols=152 Identities=22% Similarity=0.272 Sum_probs=89.8
Q ss_pred HHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCEEEECCCCCCHHH--HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCH
Q ss_conf 89999999787987--898999999999759969999289874689--99999999861042122556882799984998
Q gi|254780601|r 9 QVIGEALSERGYVN--LTSVQEAILNPDLREKDVLVSAQTGSGKTV--AFGLALASTLLAENDRFSPASAPLALAIAPTR 84 (573)
Q Consensus 9 ~~l~~~l~~~g~~~--pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~--af~lp~l~~l~~~~~~~~~~~~~~~lil~PTr 84 (573)
T Consensus 133 ~~~~~~L~~l-f~~~~~~dwQk~A~a~Al~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~-------~~l~I~LaAPTG 204 (607)
T PRK10875 133 ALLAQTLDAL-FPPGDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADG-------ERCRIRLAAPTG 204 (607)
T ss_pred HHHHHHHHHH-CCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC-------CCCEEEEECCHH
T ss_conf 9999999985-79988851899999998755778996799987788999999999996458-------997089988228
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHH------HHCCCCCCCCCEEEEEECCC
Q ss_conf 999999999999854469879999889987999996128975998223101332------10001224643189996131
Q gi|254780601|r 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH------IRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 85 ELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~------~~~~~l~l~~v~~lVlDEaD 158 (573)
T Consensus 205 KAAaRL~Esi~~~~~~l~~~----------~~~~~~~p~----~a~TiHRLLg~~p~~~~f~~~~~nPL~~DvlIVDEAS 270 (607)
T PRK10875 205 KAAARLTESLGKALRQLPLT----------DEQKKRIPE----DASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS 270 (607)
T ss_pred HHHHHHHHHHHHHHHHCCCC----------HHHHHCCCC----CCEEHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCH
T ss_conf 99999999998787534766----------566633765----5665897529678987656577999988989990733
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 1001001235788875214334225631
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFS 186 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~S 186 (573)
T Consensus 271 -MVDl---~Lm~~LL~Alp~~aRLILvG 294 (607)
T PRK10875 271 -MIDL---PMMSRLIDALPDHARVIFLG 294 (607)
T ss_pred -HHHH---HHHHHHHHHCCCCCEEEEEC
T ss_conf -6659---99999998289998899965