HHsearch alignment for GI: 254780601 and conserved domain: PRK11054

Probab=93.60  E-value=0.55  Score=25.83  Aligned_cols=81  Identities=21%  Similarity=0.156  Sum_probs=48.2

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf             87898999999999759969999289874689999999998610421225568827999849989999999999998544
Q gi|254780601|r   21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK  100 (573)
Q Consensus        21 ~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~  100 (573)
T Consensus       195 ~PLn~~Qr~Av--i~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~-----~~P~~ILaLTFT~kAA~EMreRl~~~lg~  267 (684)
T PRK11054        195 SPLNPSQARAV--VNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-----AQPEQILLLAFGRKAAEEMDERIRERLGT  267 (684)
T ss_pred             CCCCHHHHHHE--EECCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-----CCHHHEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf             99998999572--747996489833899707799999999997599-----98667786863499999999999975499


Q ss_pred             CCCEEEEE
Q ss_conf             69879999
Q gi|254780601|r  101 TGVVVAVC  108 (573)
Q Consensus       101 ~~~~v~~~  108 (573)
T Consensus       268 ~~v~~~TF  275 (684)
T PRK11054        268 EDITARTF  275 (684)
T ss_pred             CCEEEEEH
T ss_conf             98378659