HHsearch alignment for GI: 254780601 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=99.86 E-value=1.9e-18 Score=143.17 Aligned_cols=327 Identities=20% Similarity=0.296 Sum_probs=201.8
Q ss_pred HHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH-HHHHHCCCEEE
Q ss_conf 9999997-599699992898746899999999986104212255688279998499899999999999-98544698799
Q gi|254780601|r 29 AILNPDL-REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE-WLYAKTGVVVA 106 (573)
Q Consensus 29 ~~ip~~l-~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~-~l~~~~~~~v~ 106 (573)
T Consensus 80 ~~i~~~i~~nqVvii~GeTGsGKTT--QiPq~--~le~-g~---g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~~VG 151 (1295)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKI--CLEL-GR---GIKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1295)
T ss_pred HHHHHHHHHCCEEEEECCCCCCHHH--HHHHH--HHHC-CC---CCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999999979969997689998788--99999--9962-79---999989977965999999999999981999899888
Q ss_pred EEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC-CCCCHHH-HHHHHHHHHCCCCCCEEE
Q ss_conf 99889987999996128975998223101332100012246431899961311-0010012-357888752143342256
Q gi|254780601|r 107 VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE-MLDLGFR-DDIEFILDSSPKKRRMLM 184 (573)
Q Consensus 107 ~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~-ml~~gf~-~~i~~i~~~~p~~~q~~l 184 (573)
T Consensus 152 Y~VRf---~~---~~s~~t~i~~~TdGiLL~e~~~d-~~L~~y~~iIiDEaHERsl~~D~LLg~Lk~ll~~R~d-LKvIi 223 (1295)
T PRK11131 152 YKVRF---ND---QVSDNTMVKLMTDGILLAEIQQD-RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPD-LKVII 223 (1295)
T ss_pred EEECC---CC---CCCCCCEEEEECCHHHHHHHHHC-CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCC-CEEEE
T ss_conf 89456---98---87999779997656999986209-9878877799868556880199999999999833999-88999
Q ss_pred EECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCC-C-----CCHHHHHHHHCC---CCCCCCEEEEECCCHH
Q ss_conf 311112220011112101233332333232566520000000-0-----000245542001---0235641677513023
Q gi|254780601|r 185 FSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLV-A-----LSDRDNAIVNIL---RYHGAKNAIVFCSTRA 255 (573)
Q Consensus 185 ~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v-~-----~~~k~~~l~~ll---~~~~~~~~ivF~~t~~ 255 (573)
T Consensus 224 mSATid~e--~fs~-yF~~apvi~v~Gr~~PV---ev~y~p~~~~~~~~~~d~~~~i~~~v~~~~~~~~GdILVFLpG~~ 297 (1295)
T PRK11131 224 TSATIDPE--RFSR-HFNNAPIIEVSGRTYPV---EVRYRPIVEEADDTERDQLQAIFDAVDELGRESPGDILIFMSGER 297 (1295)
T ss_pred ECCCCCHH--HHHH-HCCCCCEEEECCCCCCE---EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf 55868979--9996-57999989878917886---757636866544215899999999999985489987798669799
Q ss_pred HHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCC----------
Q ss_conf 3456555554226---663010489999999999866544881499853865001457887338970588----------
Q gi|254780601|r 256 SVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS---------- 322 (573)
Q Consensus 256 ~~~~l~~~L~~~g---~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P---------- 322 (573)
T Consensus 298 EI~~~~~~L~~~~~~~~~ilPL~s~ls~~eQ~~vF~p--~~~RkIVlaTNIAETSlTIp~I~yVIDsG~~k~~~y~~~~~ 375 (1295)
T PRK11131 298 EIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK 375 (1295)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCC--CCCCEEEEECCCCCCCCEECCEEEEEECCCEEEEEECCCCC
T ss_conf 9999999986148988769865578999999998488--99733898405200010005648999378401004757778
Q ss_pred --------CCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHH--------------HHHH--HHHH----CCCCCCCCCC
Q ss_conf --------7478999860301037888602564059999999--------------9999--9850----6641056899
Q gi|254780601|r 323 --------SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRA--------------ERLF--REAN----VSVVWEPAPS 374 (573)
Q Consensus 323 --------~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~--------------~~i~--~~~~----~~~~~~~~Ps 374 (573)
T Consensus 376 ~~~L~~~~iSqAsA~QR~GRaGR~-~~G~C~RLyse~~~~~~p~~t~PEIlR~~L~~viLqm~~lgl~~i~~F~f~dpP~ 454 (1295)
T PRK11131 376 VQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPD 454 (1295)
T ss_pred CCEEEEEEECHHHHHHHHHHHCCC-CCCEEEEEECHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 664667870165698750540788-9953999835988852877899867416679999999864899914588999999
Q ss_pred HHHHHH
Q ss_conf 999888
Q gi|254780601|r 375 VEAIRE 380 (573)
Q Consensus 375 ~eeI~~ 380 (573)
T Consensus 455 ~~~i~~ 460 (1295)
T PRK11131 455 KRNIQD 460 (1295)
T ss_pred HHHHHH
T ss_conf 899999