HHsearch alignment for GI: 254780601 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=100.00 E-value=0 Score=1048.74 Aligned_cols=541 Identities=30% Similarity=0.448 Sum_probs=473.3
Q ss_pred CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 9777--99889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA 79 (573)
Q Consensus 2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li 79 (573)
T Consensus 6 ~sF~~lgL~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~------~~pqaLI 79 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL------KAPQILV 79 (629)
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC------CCCCEEE
T ss_conf 9877679899999999987999999999999999967998899788847899999999999866236------8986899
Q ss_pred ECCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf 8499899999999999985446-987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r 80 IAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD 158 (573)
Q Consensus 80 l~PTrELa~Qv~~~~~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD 158 (573)
T Consensus 80 L~PTRELA~QV~~~~~~l~~~~~~i~v~~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHH
T ss_conf 78998999999999999972179977999989977899999862799999969899999997296412007678986715
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHC
Q ss_conf 10010012357888752143342256311112220011112101233332333232566520000000000024554200
Q gi|254780601|r 159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI 238 (573)
Q Consensus 159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~l 238 (573)
T Consensus 160 ~mL~~gF~~di~~Il~~lp~~~Qt~LfSATmp~~i~~la~~~l~~P~~i~i~~~~~t~~~i~q~~~~v~~~~K~~aL~~~ 239 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF 239 (629)
T ss_pred HHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf 53363659999999986740314466631465999999998756987974045555577630599996524579999999
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 10235641677513023345655555422666301048999999999986654488149985386500145788733897
Q gi|254780601|r 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH 318 (573)
Q Consensus 239 l~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin 318 (573)
T Consensus 240 L~~~~~~~~IIF~~Tk~~~~~l~~~L~~~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDvaARGLDi~~V~~VIN 319 (629)
T PRK11634 240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred HHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEE
T ss_conf 86158884899982278899999999976996576568999999999999997599988987862105577256888999
Q ss_pred ECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--C
Q ss_conf 05887478999860301037888602564059999999999998506641056899999888899865544310122--2
Q gi|254780601|r 319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS--I 396 (573)
Q Consensus 319 ~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps~eeI~~~~~~~l~~~~~~~~~--~ 396 (573)
T Consensus 320 yDlP~d~e~YVHRiGRTGRaGr~G~Aitfv~~~e~~~l~~ier~~~~~~~~~~~p~~~~i~~~r~~~~~~~~~~~~~~~~ 399 (629)
T PRK11634 320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSD 399 (629)
T ss_pred ECCCCCHHHCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 68989743401025833168996469998888999999999999779860148969999999999999999988751254
Q ss_pred CHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCC---CCC------CCCCCCCCCCCCCC--CCC
Q ss_conf 045577666665-----4200478999999986201111222-342211---112------11233322222223--345
Q gi|254780601|r 397 QGDEKKMVDVLL-----AKHDPEKIAAGFLRIHRAGLCAPEE-ITPVSL---VSG------RDRFRDDSRAFKVG--GGS 459 (573)
Q Consensus 397 ~~~~~~~~e~Ll-----~~~dpe~IAaALlkl~~~~~~~~e~-~~~~~~---~~~------r~r~r~~~R~~r~~--~~~ 459 (573)
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~a~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 479 (629)
T PRK11634 400 LDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479 (629)
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 68999999997530366657999999999997513565556765334420010343333334444555666555567656
Q ss_pred CCCCCCEEEEEEECHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEECHHHHHHHHH----HHHCCCCCCEEE
Q ss_conf 6677880499996702279868899997750028998883003641885067618999999999----851487641155
Q gi|254780601|r 460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR----TVKLDKGIQLKY 535 (573)
Q Consensus 460 R~~~~g~~r~~InvGr~d~v~p~~ivgai~~~~~i~~~~IG~I~i~~~~S~vei~~~~~~~~~~----~~~~~k~~~~~~ 535 (573)
T Consensus 480 ~~~~~~~~~~~i~vG~~~~~~p~~ivgai~~~~~i~~~~iG~I~i~~~~s~ve~p~~~~~~~~~~l~~~~v~~~~~~~~~ 559 (629)
T PRK11634 480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQL 559 (629)
T ss_pred CCCCCCCEEEEEECCHHCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECCCCCHHHHHHHHHHCEECCCCCCEEE
T ss_conf 56788855999957322199856567651365799830168527627753886674056999998764576575220267
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 4666665444456
Q gi|254780601|r 536 LGGEKPDFRGYKS 548 (573)
Q Consensus 536 ~~~~~~~~r~~~~ 548 (573)
T Consensus 560 ~~~~~~~~~~~~~ 572 (629)
T PRK11634 560 LGDAQPHTGGERR 572 (629)
T ss_pred CCCCCCCCCCCCC
T ss_conf 6667887887656