HHsearch alignment for GI: 254780601 and conserved domain: PRK11634

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=100.00  E-value=0  Score=1048.74  Aligned_cols=541  Identities=30%  Similarity=0.448  Sum_probs=473.3

Q ss_pred             CCCC--CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf             9777--99889999999787987898999999999759969999289874689999999998610421225568827999
Q gi|254780601|r    2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALA   79 (573)
Q Consensus         2 ~~f~--~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~li   79 (573)
T Consensus         6 ~sF~~lgL~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~------~~pqaLI   79 (629)
T PRK11634          6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL------KAPQILV   79 (629)
T ss_pred             CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCC------CCCCEEE
T ss_conf             9877679899999999987999999999999999967998899788847899999999999866236------8986899


Q ss_pred             ECCCHHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCC
Q ss_conf             8499899999999999985446-987999988998799999612897599822310133210001224643189996131
Q gi|254780601|r   80 IAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEAD  158 (573)
Q Consensus        80 l~PTrELa~Qv~~~~~~l~~~~-~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD  158 (573)
T Consensus        80 L~PTRELA~QV~~~~~~l~~~~~~i~v~~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD  159 (629)
T PRK11634         80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD  159 (629)
T ss_pred             ECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHH
T ss_conf             78998999999999999972179977999989977899999862799999969899999997296412007678986715


Q ss_pred             CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHC
Q ss_conf             10010012357888752143342256311112220011112101233332333232566520000000000024554200
Q gi|254780601|r  159 EMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNI  238 (573)
Q Consensus       159 ~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~~~l~~l  238 (573)
T Consensus       160 ~mL~~gF~~di~~Il~~lp~~~Qt~LfSATmp~~i~~la~~~l~~P~~i~i~~~~~t~~~i~q~~~~v~~~~K~~aL~~~  239 (629)
T PRK11634        160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRF  239 (629)
T ss_pred             HHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHH
T ss_conf             53363659999999986740314466631465999999998756987974045555577630599996524579999999


Q ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf             10235641677513023345655555422666301048999999999986654488149985386500145788733897
Q gi|254780601|r  239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIH  318 (573)
Q Consensus       239 l~~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin  318 (573)
T Consensus       240 L~~~~~~~~IIF~~Tk~~~~~l~~~L~~~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDvaARGLDi~~V~~VIN  319 (629)
T PRK11634        240 LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN  319 (629)
T ss_pred             HHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEE
T ss_conf             86158884899982278899999999976996576568999999999999997599988987862105577256888999


Q ss_pred             ECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--C
Q ss_conf             05887478999860301037888602564059999999999998506641056899999888899865544310122--2
Q gi|254780601|r  319 AELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDS--I  396 (573)
Q Consensus       319 ~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~~~~Ps~eeI~~~~~~~l~~~~~~~~~--~  396 (573)
T Consensus       320 yDlP~d~e~YVHRiGRTGRaGr~G~Aitfv~~~e~~~l~~ier~~~~~~~~~~~p~~~~i~~~r~~~~~~~~~~~~~~~~  399 (629)
T PRK11634        320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSD  399 (629)
T ss_pred             ECCCCCHHHCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             68989743401025833168996469998888999999999999779860148969999999999999999988751254


Q ss_pred             CHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCC---CCC------CCCCCCCCCCCCCC--CCC
Q ss_conf             045577666665-----4200478999999986201111222-342211---112------11233322222223--345
Q gi|254780601|r  397 QGDEKKMVDVLL-----AKHDPEKIAAGFLRIHRAGLCAPEE-ITPVSL---VSG------RDRFRDDSRAFKVG--GGS  459 (573)
Q Consensus       397 ~~~~~~~~e~Ll-----~~~dpe~IAaALlkl~~~~~~~~e~-~~~~~~---~~~------r~r~r~~~R~~r~~--~~~  459 (573)
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~a~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  479 (629)
T PRK11634        400 LDQYRALLAKIQPTAEGEELDLETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE  479 (629)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             68999999997530366657999999999997513565556765334420010343333334444555666555567656


Q ss_pred             CCCCCCEEEEEEECHHHCCCCHHHHHHHHHHCCCCCHHHEEEEEECCCCCEEEECHHHHHHHHH----HHHCCCCCCEEE
Q ss_conf             6677880499996702279868899997750028998883003641885067618999999999----851487641155
Q gi|254780601|r  460 RDNFKGSSWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRR----TVKLDKGIQLKY  535 (573)
Q Consensus       460 R~~~~g~~r~~InvGr~d~v~p~~ivgai~~~~~i~~~~IG~I~i~~~~S~vei~~~~~~~~~~----~~~~~k~~~~~~  535 (573)
T Consensus       480 ~~~~~~~~~~~i~vG~~~~~~p~~ivgai~~~~~i~~~~iG~I~i~~~~s~ve~p~~~~~~~~~~l~~~~v~~~~~~~~~  559 (629)
T PRK11634        480 RRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQL  559 (629)
T ss_pred             CCCCCCCEEEEEECCHHCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECCCCCHHHHHHHHHHCEECCCCCCEEE
T ss_conf             56788855999957322199856567651365799830168527627753886674056999998764576575220267


Q ss_pred             CCCCCCCCCCCCC
Q ss_conf             4666665444456
Q gi|254780601|r  536 LGGEKPDFRGYKS  548 (573)
Q Consensus       536 ~~~~~~~~r~~~~  548 (573)
T Consensus       560 ~~~~~~~~~~~~~  572 (629)
T PRK11634        560 LGDAQPHTGGERR  572 (629)
T ss_pred             CCCCCCCCCCCCC
T ss_conf             6667887887656