HHsearch alignment for GI: 254780601 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=99.90 E-value=5.2e-21 Score=160.50 Aligned_cols=320 Identities=23% Similarity=0.327 Sum_probs=207.3
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HHHHCCCEEEEEECCCC
Q ss_conf 75996999928987468999999999861042122556882799984998999999999999-85446987999988998
Q gi|254780601|r 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGVVVAVCIGGVS 113 (573)
Q Consensus 35 l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~-l~~~~~~~v~~~~gg~~ 113 (573)
T Consensus 18 ~~~~~~vl~a~tGsGKtTq--vP~~--ll~~~~~----~-g~I~~~qPRR~AA~s~A~RvA~e~~e~~G~~VGY~vR~e~ 88 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTW--LPLQ--LLQQGGI----N-GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHCCEEEEEECCCCCHHHH--HHHH--HHHCCCC----C-CCEEEECCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 9799799990899998999--9999--9964688----9-9389938839999999999999729999986757825677
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCC-C----CCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 79999961289759982231013321000122464318999613110-0----100123578887521433422563111
Q gi|254780601|r 114 VHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEM-L----DLGFRDDIEFILDSSPKKRRMLMFSAT 188 (573)
Q Consensus 114 ~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~m-l----~~gf~~~i~~i~~~~p~~~q~~l~SAT 188 (573)
T Consensus 89 ------~~s~~Tri~~~T~GiLlr~l~~dp-~L~~~~~vI~DE~HER~l~~Dl~l~l~---~~~~~~~r~dLklvvMSAT 158 (812)
T PRK11664 89 ------KVGPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALL---LDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred ------CCCCCCEEEEECHHHHHHHHHHCC-CCCCCCEEEEECCCCCCHHHHHHHHHH---HHHHHHHCCCCEEEEECCC
T ss_conf ------889985799975589999972497-767788899957546875189999999---9999861898289998478
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHH-----HHHHHCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 12220011112101233332333232566520000000000024-----5542001023564167751302334565555
Q gi|254780601|r 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-----NAIVNILRYHGAKNAIVFCSTRASVSRFTKV 263 (573)
Q Consensus 189 ~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~v~~~~k~-----~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~ 263 (573)
T Consensus 159 ld~~--~~-~~~~~~~~~i~~~gr~f--p-V~~~y~~~~~~~~~~~~~~~~i~~~~~-~~~G~iLvFLPG~~EI~~~~~~ 231 (812)
T PRK11664 159 LDND--RL-QQLLPDAPYIESEGRSF--P-VERRYQPLPAHQRFDEAVAVATAELLR-QESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred CCHH--HH-HHHCCCCCEEEECCCCC--C-EEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEECCCHHHHHHHHHH
T ss_conf 8848--89-97589998898787433--1-157854688520699999999999973-5899889976998999999999
Q ss_pred HHHC---CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCC------------------
Q ss_conf 5422---6663010489999999999866544881499853865001457887338970588------------------
Q gi|254780601|r 264 LAEH---LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS------------------ 322 (573)
Q Consensus 264 L~~~---g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P------------------ 322 (573)
T Consensus 232 L~~~~~~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~gV~~VIDsG~~r~~~~d~~~g~~~L~~~~ 311 (812)
T PRK11664 232 LASRVGSDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLETQR 311 (812)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEECCEEEEEECHHHHHHEECCCCCCCEEEEEE
T ss_conf 86335578089964478998898776067999953799950200020201781489740223443234357975676770
Q ss_pred CCHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHH--------------HH--HHHHH----CCCCCCCCCCHHHHHHH
Q ss_conf 74789998603010378886025640599999999--------------99--99850----66410568999998888
Q gi|254780601|r 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAE--------------RL--FREAN----VSVVWEPAPSVEAIRER 381 (573)
Q Consensus 323 ~~~~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~--------------~i--~~~~~----~~~~~~~~Ps~eeI~~~ 381 (573)
T Consensus 312 iSkasa~QRaGRAGR~-~pG~cyRL~s~~~~~~~~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~a~~~A 389 (812)
T PRK11664 312 ISQASMTQRAGRAGRL-EPGICLHLYAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQLSWLDQPPAVNLAAA 389 (812)
T ss_pred CCHHHHHCCCCCCCCC-CCCEEEEEECHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHH
T ss_conf 4544353136767888-99707873359888527469980555276899999999659998776879999798999999