HHsearch alignment for GI: 254780601 and conserved domain: PRK12723

Probab=97.31  E-value=0.0061  Score=38.95  Aligned_cols=88  Identities=17%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             EEEECCCCCCHHHHHH-HHHHHHHHCCCCCCCCCCCCEEEEECCC-HHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf             9999289874689999-9999986104212255688279998499-8999999999999854469879999889987999
Q gi|254780601|r   40 VLVSAQTGSGKTVAFG-LALASTLLAENDRFSPASAPLALAIAPT-RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE  117 (573)
Q Consensus        40 ~i~~a~TGsGKT~af~-lp~l~~l~~~~~~~~~~~~~~~lil~PT-rELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q  117 (573)
T Consensus       177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~-k----~~~V~lit~DtyRigA---veQLktya~il~vp~~v~~~~~dl~~~  248 (388)
T PRK12723        177 FILVGPTGVGKTTTIAKLAAIYGINSDD-K----SLNIKIITIDNYRIGA---KKQIQTYGDIMGIPVKAIESFKDLKEE  248 (388)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCC-C----CCCEEEEEECCCCHHH---HHHHHHHHHHHCCCEEEECCHHHHHHH
T ss_conf             9998998875787999999999986267-6----7737999807875889---999999999978806985788999999


Q ss_pred             HHHHCCCCEEEEECCCCH
Q ss_conf             996128975998223101
Q gi|254780601|r  118 RRDLQNGAHIVVGTPGRL  135 (573)
Q Consensus       118 ~~~l~~~~~iiv~TPgrl  135 (573)
T Consensus       249 l~~~~~~D~IlIDTAGrs  266 (388)
T PRK12723        249 ITQSKDFDLVLIDTIGKS  266 (388)
T ss_pred             HHHHCCCCEEEEECCCCC
T ss_conf             997249999999589988