HHsearch alignment for GI: 254780601 and conserved domain: PRK12903
>PRK12903 secA preprotein translocase subunit SecA; Reviewed.
Probab=99.65 E-value=5.3e-13 Score=106.63 Aligned_cols=320 Identities=19% Similarity=0.215 Sum_probs=198.0
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 74 ~lg~r-~ydvQl~gg~~l~~G~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDae~m~~ 141 (885)
T PRK12903 74 VLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALEG---------KGVIVSTVNEYLAERDAEEMGK 141 (885)
T ss_pred HCCCC-CCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCCEEEECCHHHHHHHHHHHHH
T ss_conf 61898-6378999899984595--1465068857999999999987469---------9808980645655855999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
T Consensus 142 ~y~~lGltvg~~~~~~~~~~r~~a--Y~~ditY~tn~e~gFDyLrDnm~~~~~~~vqr~~~~aIvDEvDSiLIDeArtPL 219 (885)
T PRK12903 142 VFKFLGLSVGINKANMDPNLKREA--YNCDITYSTHSELGFDYLRDNMVSSYEEKVQRGLNFCLIDEVDSILIDEARTPL 219 (885)
T ss_pred HHHHHCCEEEECCCCCCHHHHHHH--HCCCCEEECCCCEEECCCCCCCCCCHHHHCCCCCCEEEEECCHHHHHCCCCCCC
T ss_conf 999829656011899997999998--569967977865030114001135837725889980366541144330467752
Q ss_pred ----------HHHHHHHHHHHHCC--------CCCCEEEEECCC-----------------CCCCHHH-----HHH-HCC
Q ss_conf ----------01235788875214--------334225631111-----------------2220011-----112-101
Q gi|254780601|r 164 ----------GFRDDIEFILDSSP--------KKRRMLMFSATI-----------------SPAITTL-----AKN-YQK 202 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~p--------~~~q~~l~SAT~-----------------~~~i~~l-----~~~-~~~ 202 (573)
T Consensus 220 iisg~~~~~~~~y~~~~~~~~~l~~~dy~id~~~~~v~lte~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~l~~~ 299 (885)
T PRK12903 220 IISGGKSNESNLYKAADQFVRTLEEDDYKIDEESKAIYLTEKGIKKANKFFKLDNLYAIENSELFHRIQNALRAHKVFKE 299 (885)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 57678988646999999986533656688631447764251158999984266444661157999999999999999856
Q ss_pred CCC------------------------------------CCCCCCCCCCCCCCCHH-CC---------------------
Q ss_conf 233------------------------------------33233323256652000-00---------------------
Q gi|254780601|r 203 DAV------------------------------------RVNIASENRQHSDIDYR-AV--------------------- 224 (573)
Q Consensus 203 ~p~------------------------------------~i~~~~~~~~~~~i~~~-~~--------------------- 224 (573)
T Consensus 300 d~dYiV~d~~v~ivDe~TGR~m~grr~s~GLhQaiEaKE~v~i~~e~~t~a~iT~Qn~Fr~y~kl~GmTGTa~te~~Ef~ 379 (885)
T PRK12903 300 GVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI 379 (885)
T ss_pred CCCEEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHHH
T ss_conf 97079977928998789886278880303689999987288779887313663099898646042267677788999999
Q ss_pred -------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -------------------------000000245542001-023-56416775130233456555554226663010489
Q gi|254780601|r 225 -------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277 (573)
Q Consensus 225 -------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~ 277 (573)
T Consensus 380 ~iY~l~v~~iPtn~p~~R~d~~d~vy~t~~~k~~av~~ei~~~~~~gqPvLvgt~sve~Se~ls~~L~~~~i~h~vLNAk 459 (885)
T PRK12903 380 DIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHEKGQPILIGTAQVEDSEQLHEYLLEANIPHTVLNAK 459 (885)
T ss_pred HHHCCEEEECCCCCCCEEECCCCHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 98697369818999852142832310789999999999999998579988995684799999999998568770355468
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CC-----CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf 9999999998665448814998538650014578---87-----338970588747899986030103788860256405
Q gi|254780601|r 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLP---DL-----ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIP 349 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~---~v-----~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~ 349 (573)
T Consensus 460 --~~~~EA~Iia~AG~~g~VTiATNMAGRGTDI~Lg~~v~~~GGL~VigterhesrRiD~QLrGR~gRQGDpG~s~f~~S 537 (885)
T PRK12903 460 --QHAREAEIIAKAGQKGAITIATNMAGRGTDIKLSKGVLELGGLYVLGTEKAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (885)
T ss_pred --CHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf --658899999954899918983766789968574165897298589842656204588886074346899973599997
Q ss_pred HHH
Q ss_conf 999
Q gi|254780601|r 350 QNM 352 (573)
Q Consensus 350 ~~e 352 (573)
T Consensus 538 leD 540 (885)
T PRK12903 538 LDD 540 (885)
T ss_pred CCH
T ss_conf 264