HHsearch alignment for GI: 254780601 and conserved domain: PRK12906
>PRK12906 secA preprotein translocase subunit SecA; Reviewed.
Probab=99.72 E-value=4.5e-14 Score=113.82 Aligned_cols=320 Identities=22% Similarity=0.243 Sum_probs=198.6
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 76 ~lg~-r~ydvQl~Gg~~L~~G~--iaEM~TGEGKTL~atlp~ylnaL~G---------kgvhvvTvNdYLA~RDae~m~~ 143 (823)
T PRK12906 76 VLGL-YPFDVQIIGGIALHFGN--IAEMRTGEGKTLTATLPVYLNALEG---------KGVHVVTVNEYLAKRDATEMGE 143 (823)
T ss_pred HCCC-CCCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEEECCHHHHHHHHHHHHH
T ss_conf 6389-76478999899983695--2565068858999999999986469---------9808980544655867999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHH------CCCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-33210------001224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIR------GKGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~------~~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
T Consensus 144 vy~~lGltvg~i~~~~~~~err~a--Y~~DItY~Tn~e~gFDYLRDnm~~~~~~~vqr~~~~aIvDEvDSiLIDEArtPL 221 (823)
T PRK12906 144 LYRWLGLTVGLNLNDMSPDEKREA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (823)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHH--HCCCCEEECCCCEECCCCCCCCCCCHHHHCCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 999809667120899998999998--507844625655021113544126888834788855898541465432356762
Q ss_pred ----------HHHHHHHHHHHHCC--------------------CCCCEEEEECCC--------------CCC--CHH--
Q ss_conf ----------01235788875214--------------------334225631111--------------222--001--
Q gi|254780601|r 164 ----------GFRDDIEFILDSSP--------------------KKRRMLMFSATI--------------SPA--ITT-- 195 (573)
Q Consensus 164 ----------gf~~~i~~i~~~~p--------------------~~~q~~l~SAT~--------------~~~--i~~-- 195 (573)
T Consensus 222 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i 301 (823)
T PRK12906 222 IISGPAEGASDLYIRADRFVKTLTKDEDDDADDDEDHGDYKIDEPSKTVSLTEEGIEKAEKLLGLDNLYDPENQALVHHI 301 (823)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 66257755535899999999999863431123347777758742546677517799998860488877883110599999
Q ss_pred ---H-HHH-HCCCCCC------------------------------------CCCCCCCCCCCCCCH-HCC---------
Q ss_conf ---1-112-1012333------------------------------------323332325665200-000---------
Q gi|254780601|r 196 ---L-AKN-YQKDAVR------------------------------------VNIASENRQHSDIDY-RAV--------- 224 (573)
Q Consensus 196 ---l-~~~-~~~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~--------- 224 (573)
T Consensus 302 ~~aL~A~~lf~~d~dYiV~d~~V~ivDe~TGR~m~gRr~s~GLHQAiEaKE~v~i~~e~~tlA~IT~QnfFr~Y~kLsGM 381 (823)
T PRK12906 302 DQALRANYLMLKDKDYIVQNGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQNENQTLATITYQNYFRLYKKLSGM 381 (823)
T ss_pred HHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHCHHHCCC
T ss_conf 99999999985798589988918998788888689992664679999987288778887303676699998646253167
Q ss_pred -------------------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHHHHHHHHH
Q ss_conf -------------------------------------000000245542001-023-56416775130233456555554
Q gi|254780601|r 225 -------------------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVSRFTKVLA 265 (573)
Q Consensus 225 -------------------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~~l~~~L~ 265 (573)
T Consensus 382 TGTA~te~~Ef~~iY~l~Vv~IPTn~P~~R~d~~d~iy~t~~~K~~Ai~~ei~~~~~~gqPvLvGT~SVe~SE~ls~~L~ 461 (823)
T PRK12906 382 TGTAKTEEEEFREIYNMDVITIPTNRPVIRVDLPDLLYPTLDSKFNAVVDDIKERHAKGQPVLVGTVSIESSERLSQLLD 461 (823)
T ss_pred CCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 67768789999998688618717999851150743464799999999999999998679988997175899999999999
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC--------------------------------C
Q ss_conf 22666301048999999999986654488149985386500145788--------------------------------7
Q gi|254780601|r 266 EHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD--------------------------------L 313 (573)
Q Consensus 266 ~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~--------------------------------v 313 (573)
T Consensus 462 ~~gi~h~vLNAk--~~~~EA~IIa~AG~~GaVTIATNMAGRGTDI~LGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 539 (823)
T PRK12906 462 KAGIPHAVLNAK--NHAKEAEIIAQAGQRGAVTIATNMAGRGTDIKLGGNPFEDIEAYQEAWIRELPKMKQRCEERRDKV 539 (823)
T ss_pred HCCCCHHHHCCC--CHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 768703530687--757899999834899938970655689879630897302134332224667888888776556899
Q ss_pred -----CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf -----338970588747899986030103788860256405999
Q gi|254780601|r 314 -----ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 314 -----~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
T Consensus 540 ~~~GGL~VIgTErheSrRIDnQLrGRaGRQGDPGss~F~lSLED 583 (823)
T PRK12906 540 RELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSTRFYLSLED 583 (823)
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
T ss_conf 97389379850444025678787232134799985237653346