HHsearch alignment for GI: 254780601 and conserved domain: PRK13107
>PRK13107 preprotein translocase subunit SecA; Reviewed.
Probab=99.62 E-value=3.8e-12 Score=100.83 Aligned_cols=320 Identities=20% Similarity=0.238 Sum_probs=190.7
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 78798789899999999975996999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 78 ~lg~r-~ydvQl~gg~~Lh~G~--iaEM~TGEGKTL~atlp~ylnal~g---------~gvhvvTvNdYLA~RDae~m~~ 145 (908)
T PRK13107 78 VFEMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTG---------KGVHVITVNDYLARRDAENNRP 145 (908)
T ss_pred HCCCC-CCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEECCCHHHHHHHHHHHHH
T ss_conf 63897-5479999899984695--1465178855999999999987559---------9709972653554754999999
Q ss_pred HHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCH-HHHHHC------CCCCCCCCEEEEEECCCCCC-CC-----
Q ss_conf 854469879999889987999996128975998223101-332100------01224643189996131100-10-----
Q gi|254780601|r 97 LYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL-CDHIRG------KGLNISHLKAVVLDEADEML-DL----- 163 (573)
Q Consensus 97 l~~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl-~d~~~~------~~l~l~~v~~lVlDEaD~ml-~~----- 163 (573)
T Consensus 146 vy~~lGlsvg~i~~~~~~~er~~a--Y~~DitY~Tn~e~gFDYLRDnm~~~~~~~vqr~~~~aivDEvDSiLIDEArtPL 223 (908)
T PRK13107 146 LFEFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPL 223 (908)
T ss_pred HHHHHCCEEEECCCCCCHHHHHHH--CCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEECHHHHHHHCCCCCE
T ss_conf 999819757331799996999984--568864535764234235743015758753567764887422354321356875
Q ss_pred ---H-------HHHHHHHHHHHC--------------------CCCCCEEEEECCC---------------------CCC
Q ss_conf ---0-------123578887521--------------------4334225631111---------------------222
Q gi|254780601|r 164 ---G-------FRDDIEFILDSS--------------------PKKRRMLMFSATI---------------------SPA 192 (573)
Q Consensus 164 ---g-------f~~~i~~i~~~~--------------------p~~~q~~l~SAT~---------------------~~~ 192 (573)
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~~dek~~~v~lt~~G~~~~e~~~~~~~~~~~~~~ly~~~~ 303 (908)
T PRK13107 224 IISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAAN 303 (908)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 75178875428899999999999998764222016666768843777377605179999998765676556543267001
Q ss_pred ------CH-HH-HHH-HCCCCCC------------------------------------CCCCCCCCCCCCCCH-HCC--
Q ss_conf ------00-11-112-1012333------------------------------------323332325665200-000--
Q gi|254780601|r 193 ------IT-TL-AKN-YQKDAVR------------------------------------VNIASENRQHSDIDY-RAV-- 224 (573)
Q Consensus 193 ------i~-~l-~~~-~~~~p~~------------------------------------i~~~~~~~~~~~i~~-~~~-- 224 (573)
T Consensus 304 ~~~~~~v~~aL~A~~l~~~d~dYiV~d~~v~ivDe~TGR~m~gRr~s~GLHQaiEaKE~v~i~~e~~t~A~iT~Qn~Fr~ 383 (908)
T PRK13107 304 ISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQ 383 (908)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 06777799999999998579868997896899747878778898165268999998749977888721477759988844
Q ss_pred --------------------------------------------CCCCCHHHHHHHHCC-CCC-CCCEEEEECCCHHHHH
Q ss_conf --------------------------------------------000000245542001-023-5641677513023345
Q gi|254780601|r 225 --------------------------------------------LVALSDRDNAIVNIL-RYH-GAKNAIVFCSTRASVS 258 (573)
Q Consensus 225 --------------------------------------------~v~~~~k~~~l~~ll-~~~-~~~~~ivF~~t~~~~~ 258 (573)
T Consensus 384 y~klsGMTGTA~te~~Ef~~iY~l~Vv~iPtn~p~~R~d~~d~vy~t~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE 463 (908)
T PRK13107 384 YEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSE 463 (908)
T ss_pred CHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 51521775675768999999868866984799985025089869758999999999999999975998899505289999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---CC----------------------
Q ss_conf 65555542266630104899999999998665448814998538650014578---87----------------------
Q gi|254780601|r 259 RFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP---DL---------------------- 313 (573)
Q Consensus 259 ~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~---~v---------------------- 313 (573)
T Consensus 464 ~ls~~L~~~gi~h~VLNAk--~h~~EA~Iia~AG~~gaVTIATNMAGRGTDI~LGGn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 464 LLARLMVKEKIPHEVLNAK--FHEREAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHHHHCCCCCCEECCC--CHHHHHHHHHHCCCCCCEEEECCCCCCCCCEECCCCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9999997467853010488--76889999995499998798333678986842588620213320286487899999999
Q ss_pred ------------CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf ------------338970588747899986030103788860256405999
Q gi|254780601|r 314 ------------ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNM 352 (573)
Q Consensus 314 ------------~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~~e 352 (573)
T Consensus 542 ~~~~~~V~~~GGL~VigterhesrRiDnQLrGRsgRQGDpG~srFflSLED 592 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEEEECCH
T ss_conf 886668986598089851433124677776122235789985336531328