HHsearch alignment for GI: 254780601 and conserved domain: PRK13709
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional.
Probab=92.52 E-value=0.22 Score=28.53 Aligned_cols=60 Identities=28% Similarity=0.380 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHH--HHHHHHHHCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf 8789899999999975996--9999289874689999--99999861042122556882799984998999
Q gi|254780601|r 21 VNLTSVQEAILNPDLREKD--VLVSAQTGSGKTVAFG--LALASTLLAENDRFSPASAPLALAIAPTRELA 87 (573)
Q Consensus 21 ~~pt~iQ~~~ip~~l~g~d--~i~~a~TGsGKT~af~--lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa 87 (573)
T Consensus 967 ~~LT~GQK~At~LIltT~DRFvaIQGyAGVGKTTql~avi~ai~tl-------~~~~rpqViGLAPTH~AV 1030 (1756)
T PRK13709 967 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNML-------PESERPRVVGLGPTHRAV 1030 (1756)
T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC-------CCCCCCCEEEECCHHHHH
T ss_conf 3578577877756324787259987035566677899999999725-------513587267567517899