HHsearch alignment for GI: 254780601 and conserved domain: PRK13766

>PRK13766 Hef nuclease; Provisional.
Probab=100.00  E-value=8.9e-42  Score=300.13  Aligned_cols=320  Identities=23%  Similarity=0.342  Sum_probs=226.9

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             79878989999999997599699992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r   19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY   98 (573)
Q Consensus        19 g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~   98 (573)
T Consensus        12 ~~ie~R~YQ~el~~~Al~~-NtiVvLPTG~GKT~IA~lvi~~~l~~~--------~gKilFLaPT~pLV~Qq~~~~~~~l   82 (764)
T PRK13766         12 NTIEARLYQQLLAAKALKG-NTLVVLPTGLGKTAIALLVIAERLQKY--------GGKVLILAPTKPLVEQHAEFFRKFL   82 (764)
T ss_pred             CCCCCCHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHC--------CCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             8776538799999999858-989995998668999999999999748--------9889998588889999999999970


Q ss_pred             HHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHCC
Q ss_conf             4469879999889987999996128975998223101332100012246431899961311001-001235788875214
Q gi|254780601|r   99 AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSP  177 (573)
Q Consensus        99 ~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~-~gf~~~i~~i~~~~p  177 (573)
T Consensus        83 ~i~~~~i~~ltG~~~~~~r~~~w-~~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~-~~  160 (764)
T PRK13766         83 NIDPEKIVVLTGEISPEKRAALW-EKAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHE-DA  160 (764)
T ss_pred             CCCCCEEEEEECCCCHHHHHHHH-CCCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH-CC
T ss_conf             99955289998887827689986-07999999908999999829867888228999746666677628999999985-37


Q ss_pred             CCCCEEEEECCCCCC---CHHHH------------------HHHCCCCC----CCCCC----------------------
Q ss_conf             334225631111222---00111------------------12101233----33233----------------------
Q gi|254780601|r  178 KKRRMLMFSATISPA---ITTLA------------------KNYQKDAV----RVNIA----------------------  210 (573)
Q Consensus       178 ~~~q~~l~SAT~~~~---i~~l~------------------~~~~~~p~----~i~~~----------------------  210 (573)
T Consensus       161 ~~PrILGLTASPGs~~e~I~ev~~nL~i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~~~~~~i~~~l~~~l~~~l~~L~  240 (764)
T PRK13766        161 KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVKTEDDPDVRPYVHKVKVEWIRVELPEELKEIRDLLNEALKDRLKKLK  240 (764)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             78558850368876448999999865987289614444344543356732799807978999999999999999999999


Q ss_pred             --------CCCCC------------------CCC-------------CCH--------------HCC-------------
Q ss_conf             --------32325------------------665-------------200--------------000-------------
Q gi|254780601|r  211 --------SENRQ------------------HSD-------------IDY--------------RAV-------------  224 (573)
Q Consensus       211 --------~~~~~------------------~~~-------------i~~--------------~~~-------------  224 (573)
T Consensus       241 ~~~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~ell~tqg~~~~~~yl~~l~~~~~~~~~k  320 (764)
T PRK13766        241 ELGVIVSISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGSK  320 (764)
T ss_pred             HCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             66970045554689999999999999886468799999999999999999999999851899999999999730133326


Q ss_pred             ----------------CCC----CCHHHHHHHHCCC----CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC----
Q ss_conf             ----------------000----0002455420010----235641677513023345655555422666301048----
Q gi|254780601|r  225 ----------------LVA----LSDRDNAIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG----  276 (573)
Q Consensus       225 ----------------~v~----~~~k~~~l~~ll~----~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg----  276 (573)
T Consensus       321 ~~k~l~~d~~~~~~~~~~~~~~~~hPKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~~~ik~~~fVGq~s~  400 (764)
T PRK13766        321 ASKRLVEDPRFKKAVRLLKELDIEHPKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNKNGIKAIRFVGQASR  400 (764)
T ss_pred             HHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             78998758778999998764467893799999999999726999808999276799999999986589972289836898


Q ss_pred             ----CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECH
Q ss_conf             ----99999999998665448814998538650014578873389705887478999860301037888602564059
Q gi|254780601|r  277 ----ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ  350 (573)
Q Consensus       277 ----~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~  350 (573)
T Consensus       401 ~~~kGmsqkeQ~evL~~FR~Ge~NvLVATSV~EEGLDIP~cdLVI~Yd~v~S~IR~IQR~GRTGR-~r~G~v~vLi~~  477 (764)
T PRK13766        401 DGDKGMSQKEQIETLDRFRAGEYNVLVATSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGR-QRGGRVVVLIAK  477 (764)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCC-CCCCEEEEEEEC
T ss_conf             78889898999999999857998889876766448888778889993799619999997466567-789749999956