HHsearch alignment for GI: 254780601 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=100.00 E-value=8.9e-42 Score=300.13 Aligned_cols=320 Identities=23% Similarity=0.342 Sum_probs=226.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 79878989999999997599699992898746899999999986104212255688279998499899999999999985
Q gi|254780601|r 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLY 98 (573)
Q Consensus 19 g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~ 98 (573)
T Consensus 12 ~~ie~R~YQ~el~~~Al~~-NtiVvLPTG~GKT~IA~lvi~~~l~~~--------~gKilFLaPT~pLV~Qq~~~~~~~l 82 (764)
T PRK13766 12 NTIEARLYQQLLAAKALKG-NTLVVLPTGLGKTAIALLVIAERLQKY--------GGKVLILAPTKPLVEQHAEFFRKFL 82 (764)
T ss_pred CCCCCCHHHHHHHHHHHHC-CEEEEECCCCCHHHHHHHHHHHHHHHC--------CCEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 8776538799999999858-989995998668999999999999748--------9889998588889999999999970
Q ss_pred HHCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCC-CHHHHHHHHHHHHCC
Q ss_conf 4469879999889987999996128975998223101332100012246431899961311001-001235788875214
Q gi|254780601|r 99 AKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSP 177 (573)
Q Consensus 99 ~~~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~-~gf~~~i~~i~~~~p 177 (573)
T Consensus 83 ~i~~~~i~~ltG~~~~~~r~~~w-~~~~Viv~TPQvl~ndL~~g~i~l~dv~lLVfDEaHha~Gnh~Y~~I~~~y~~-~~ 160 (764)
T PRK13766 83 NIDPEKIVVLTGEISPEKRAALW-EKAKVIVATPQVIENDLLAGRISLEDVSLLIFDEAHRAVGNYAYVFIAERYHE-DA 160 (764)
T ss_pred CCCCCEEEEEECCCCHHHHHHHH-CCCCEEEECCHHHHHHHHHCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH-CC
T ss_conf 99955289998887827689986-07999999908999999829867888228999746666677628999999985-37
Q ss_pred CCCCEEEEECCCCCC---CHHHH------------------HHHCCCCC----CCCCC----------------------
Q ss_conf 334225631111222---00111------------------12101233----33233----------------------
Q gi|254780601|r 178 KKRRMLMFSATISPA---ITTLA------------------KNYQKDAV----RVNIA---------------------- 210 (573)
Q Consensus 178 ~~~q~~l~SAT~~~~---i~~l~------------------~~~~~~p~----~i~~~---------------------- 210 (573)
T Consensus 161 ~~PrILGLTASPGs~~e~I~ev~~nL~i~~ie~rte~d~dv~~yv~~~~ie~i~V~l~~~~~~i~~~l~~~l~~~l~~L~ 240 (764)
T PRK13766 161 KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVKTEDDPDVRPYVHKVKVEWIRVELPEELKEIRDLLNEALKDRLKKLK 240 (764)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78558850368876448999999865987289614444344543356732799807978999999999999999999999
Q ss_pred --------CCCCC------------------CCC-------------CCH--------------HCC-------------
Q ss_conf --------32325------------------665-------------200--------------000-------------
Q gi|254780601|r 211 --------SENRQ------------------HSD-------------IDY--------------RAV------------- 224 (573)
Q Consensus 211 --------~~~~~------------------~~~-------------i~~--------------~~~------------- 224 (573)
T Consensus 241 ~~~~~~~~~~~~sk~~l~~~~~~~~~~i~~~~~~~~~~~~~~a~~~kl~~a~ell~tqg~~~~~~yl~~l~~~~~~~~~k 320 (764)
T PRK13766 241 ELGVIVSISPDVSKKELLGLQKRIQQEIARGDPEGYEAISIHAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGSK 320 (764)
T ss_pred HCCCEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 66970045554689999999999999886468799999999999999999999999851899999999999730133326
Q ss_pred ----------------CCC----CCHHHHHHHHCCC----CCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCC----
Q ss_conf ----------------000----0002455420010----235641677513023345655555422666301048----
Q gi|254780601|r 225 ----------------LVA----LSDRDNAIVNILR----YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSG---- 276 (573)
Q Consensus 225 ----------------~v~----~~~k~~~l~~ll~----~~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg---- 276 (573)
T Consensus 321 ~~k~l~~d~~~~~~~~~~~~~~~~hPKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~~~ik~~~fVGq~s~ 400 (764)
T PRK13766 321 ASKRLVEDPRFKKAVRLLKELDIEHPKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNKNGIKAIRFVGQASR 400 (764)
T ss_pred HHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 78998758778999998764467893799999999999726999808999276799999999986589972289836898
Q ss_pred ----CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECH
Q ss_conf ----99999999998665448814998538650014578873389705887478999860301037888602564059
Q gi|254780601|r 277 ----ELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350 (573)
Q Consensus 277 ----~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l~~~ 350 (573)
T Consensus 401 ~~~kGmsqkeQ~evL~~FR~Ge~NvLVATSV~EEGLDIP~cdLVI~Yd~v~S~IR~IQR~GRTGR-~r~G~v~vLi~~ 477 (764)
T PRK13766 401 DGDKGMSQKEQIETLDRFRAGEYNVLVATSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGR-QRGGRVVVLIAK 477 (764)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCC-CCCCEEEEEEEC
T ss_conf 78889898999999999857998889876766448888778889993799619999997466567-789749999956