HHsearch alignment for GI: 254780601 and conserved domain: PRK13767
>PRK13767 ATP-dependent helicase; Provisional.
Probab=100.00 E-value=0 Score=374.58 Aligned_cols=373 Identities=19% Similarity=0.271 Sum_probs=266.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC
Q ss_conf 77998899999997879878989999999997599699992898746899999999986104212255688279998499
Q gi|254780601|r 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83 (573)
Q Consensus 4 f~~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PT 83 (573)
T Consensus 15 ~~~l~p~v~~wf~~-~~~~p~~~Q~~a~~~i~~G~~~Li~ApTGsGKTlAaflp~l~~l~~~~~~~~~~~~~~~LyIsPL 93 (878)
T PRK13767 15 LSLLHPYVAEWFKR-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLGIIDELFRLAEEGELEDSVYCIYVSPL 93 (878)
T ss_pred HHHCCHHHHHHHHH-CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCH
T ss_conf 76279899999985-37999989999999996799889989998139999999999999850003677887289996847
Q ss_pred HHHHHHHHHHH-------HHHHHH-----CCCEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCC--CCCCCC
Q ss_conf 89999999999-------998544-----6987999988998799999612897599822310133210001--224643
Q gi|254780601|r 84 RELAVQVGREL-------EWLYAK-----TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG--LNISHL 149 (573)
Q Consensus 84 rELa~Qv~~~~-------~~l~~~-----~~~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~--l~l~~v 149 (573)
T Consensus 94 kAL~~D~~r~L~~pl~~i~~~~~~~g~~~~~i~v~vr~GDT~~~er~r~~~~pp~ILiTTPEsL~lll~~~~~~~~l~~l 173 (878)
T PRK13767 94 RALNNDIHRNLEEPLEEIREIAKERGIELPEIRHAVRTGDTSSYEKQKMLRKPPHILITTPETLAILLNSPKFREKLRTV 173 (878)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHCCC
T ss_conf 98899999988869999999987527887774477636999999999997489987987989999995496799985589
Q ss_pred EEEEEECCCCCCCC--H--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHC------CCCCCCCCCCCCCCCCCC
Q ss_conf 18999613110010--0--1235788875214334225631111222001111210------123333233323256652
Q gi|254780601|r 150 KAVVLDEADEMLDL--G--FRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQ------KDAVRVNIASENRQHSDI 219 (573)
Q Consensus 150 ~~lVlDEaD~ml~~--g--f~~~i~~i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~------~~p~~i~~~~~~~~~~~i 219 (573)
T Consensus 174 ~~VIvDE~H~l~~~kRG~~l~l~L~RL~~~~~~~~~riglSATv~~~-~~~-a~~L~g~~~~g~~r~~~iv~~~~~-k~~ 250 (878)
T PRK13767 174 KWVIVDEIHSLAENKRGVHLSLSLERLEELVGGEFVRIGLSATIEPL-EEV-AKFLVGYNDDGEPRDCEIVDTRFA-KPI 250 (878)
T ss_pred CEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH-HHH-HHHHCCCCCCCCCCCEEEECCCCC-CCC
T ss_conf 99998171675247745899999999998668998799996464899-999-998515566799985289546877-874
Q ss_pred CHHCC-------CCCCCHH----HHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC------CCCCCCCCCCCHHH
Q ss_conf 00000-------0000002----4554200102356416775130233456555554226------66301048999999
Q gi|254780601|r 220 DYRAV-------LVALSDR----DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHL------FQVVALSGELSQQE 282 (573)
Q Consensus 220 ~~~~~-------~v~~~~k----~~~l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~g------~~~~~lhg~~~q~~ 282 (573)
T Consensus 251 ~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~i--~~~~~tLvF~NtR~~aE~~~~~L~~~~~~~~~~~~i~~HHgSls~e~ 328 (878)
T PRK13767 251 DIKVLCPVDDLIHTPAEEISEALYETLDELI--QEHRTTLIFTNTRSGAERVVYKLRKRYPEEYDEDNIGAHHSSLSREV 328 (878)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHH--HHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH
T ss_conf 2688445621245885568999999999999--83897799915589999999999985343067543222017789999
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCC-CCCCCCEEEEEECH-HHHHHHHHHH
Q ss_conf 999986654488149985386500145788733897058874789998603010-37888602564059-9999999999
Q gi|254780601|r 283 RSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG-RAGRKGMSVFVIPQ-NMQRRAERLF 360 (573)
Q Consensus 283 R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtg-Rag~~G~ai~l~~~-~e~~~~~~i~ 360 (573)
T Consensus 329 R~~vE~~lk~G~l~~vV~TsSLELGIDiG~Vd~Viq~gsP~svarllQR~GRsGH~~g~~s~g~~vp~~~~ellE~~a~~ 408 (878)
T PRK13767 329 RLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLL 408 (878)
T ss_pred HHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHH
T ss_conf 99999998579986899827365077777525899758961189999983357899998046999979816899999999
Q ss_pred HHH-HCCCCCCCCCC-HHHHHHHH
Q ss_conf 985-06641056899-99988889
Q gi|254780601|r 361 REA-NVSVVWEPAPS-VEAIRERD 382 (573)
Q Consensus 361 ~~~-~~~~~~~~~Ps-~eeI~~~~ 382 (573)
T Consensus 409 ~~~~~g~le~~~~~~~~lDVLaq~ 432 (878)
T PRK13767 409 KKAREGKIDRVHIPKNPLDVLAQH 432 (878)
T ss_pred HHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 999809987667898879999999