HHsearch alignment for GI: 254780601 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=93.74 E-value=0.14 Score=29.91 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=16.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH--CCCC--CCCCCCCCCHHH
Q ss_conf 564167751302334565555542--2666--301048999999
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAE--HLFQ--VVALSGELSQQE 282 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~--~g~~--~~~lhg~~~q~~ 282 (573)
T Consensus 235 rPDRIiv-GEv-RG-~EA~~~l~A~nTGH~Gs~tTiHA~sa~~a 275 (332)
T PRK13900 235 RPDRIIV-GEL-RG-AEAFSFLRAINTGHPGSISTLHADSPAMA 275 (332)
T ss_pred CCCEEEE-CCC-CH-HHHHHHHHHHHCCCCCCEECCCCCCHHHH
T ss_conf 9975844-555-71-99999999997699971146278999999