HHsearch alignment for GI: 254780601 and conserved domain: TIGR00073
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=94.66 E-value=0.038 Score=33.65 Aligned_cols=170 Identities=22% Similarity=0.271 Sum_probs=90.5
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH
Q ss_conf 99289874689999999998610421225568827999849989999999999998544698799998899879999961
Q gi|254780601|r 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121 (573)
Q Consensus 42 ~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l 121 (573)
T Consensus 39 fmsspGSGKT~-----LiEk~~-------------------------------~~~--~~~~K~Avi~GD~~t~~DA~Rl 80 (225)
T TIGR00073 39 FMSSPGSGKTT-----LIEKLI-------------------------------ERL--DDEVKIAVIEGDVQTKNDADRL 80 (225)
T ss_pred ECCCCCCCHHH-----HHHHHH-------------------------------HHH--CCCCCEEEEECCHHHHHHHHHH
T ss_conf 02588611589-----999999-------------------------------984--5789789997553225569999
Q ss_pred C-CCCEEEEECCCCHHHHHHCCCCC--CCCCEEEEEECC-CCCCCCHHHHHHHHHHHH----CCCCCCEEEEECCCCCCC
Q ss_conf 2-89759982231013321000122--464318999613-110010012357888752----143342256311112220
Q gi|254780601|r 122 Q-NGAHIVVGTPGRLCDHIRGKGLN--ISHLKAVVLDEA-DEMLDLGFRDDIEFILDS----SPKKRRMLMFSATISPAI 193 (573)
Q Consensus 122 ~-~~~~iiv~TPgrl~d~~~~~~l~--l~~v~~lVlDEa-D~ml~~gf~~~i~~i~~~----~p~~~q~~l~SAT~~~~i 193 (573)
T Consensus 81 R~~G~~a~~~nTGk~C-HLdA~mv~G~~~~L~~~~ld~~~DlL----~IENVGNLvCP~~FdLGe~~rVvllSVTEGdD- 154 (225)
T TIGR00073 81 RKYGVPAIQINTGKEC-HLDAHMVAGAIHALKDLPLDDISDLL----LIENVGNLVCPADFDLGEHMRVVLLSVTEGDD- 154 (225)
T ss_pred HHCCCEEEEECCCCCC-CCHHHHHHHHHHHHHCCCCCCCCCEE----EEEECCCCEECCCCCCCCCCEEEEEEECCCCC-
T ss_conf 8649868863688644-40166786587554216888714626----88644761006731123563079998658999-
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCC--CCCCHHCCCCCCCHHHHHHHHCCCCCCCCEEEEECC--CHHHHHHHHHHHHH
Q ss_conf 01111210123333233323256--652000000000002455420010235641677513--02334565555542
Q gi|254780601|r 194 TTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCS--TRASVSRFTKVLAE 266 (573)
Q Consensus 194 ~~l~~~~~~~p~~i~~~~~~~~~--~~i~~~~~~v~~~~k~~~l~~ll~~~~~~~~ivF~~--t~~~~~~l~~~L~~ 266 (573)
T Consensus 155 --k~---lKyP~~F~~Ad~~~inK~DL~~~v~~D~---ek~~~---d~~~~nP~a~Ii~~S~ktg~Gl~~w~~~l~~ 220 (225)
T TIGR00073 155 --KV---LKYPAMFKEADLILINKVDLAEAVGFDV---EKMKA---DARKINPEAEIILVSAKTGKGLDEWLEFLEG 220 (225)
T ss_pred --CC---CCCCHHHHHHHHHHHCHHHHHHHHCCCH---HHHHH---HHHHHCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf --65---4661588744456214788997707367---89999---9986289507998636897347899999998