HHsearch alignment for GI: 254780601 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.17 E-value=0.034 Score=33.93 Aligned_cols=87 Identities=22% Similarity=0.352 Sum_probs=70.5
Q ss_pred CCCCCEEEEECCCHHHH----HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCCCCE
Q ss_conf 23564167751302334----565555542266630104899999999998665448814998538-6500145788733
Q gi|254780601|r 241 YHGAKNAIVFCSTRASV----SRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD-VAARGIDLPDLEL 315 (573)
Q Consensus 241 ~~~~~~~ivF~~t~~~~----~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD-vaaRGiDi~~v~~ 315 (573)
T Consensus 353 i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGTHALiqe~vef~~L~l 432 (721)
T TIGR00643 353 IESGYQVALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGTHALIQEKVEFKRLGL 432 (721)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCE
T ss_conf 84698099917768999999999999623548578886156678789999999863952057331355452144314774
Q ss_pred EEEECCCCCHHHHHHHHCCC
Q ss_conf 89705887478999860301
Q gi|254780601|r 316 VIHAELSSNPENLLHRSGRT 335 (573)
Q Consensus 316 Vin~d~P~~~~~yvHR~GRt 335 (573)
T Consensus 433 VIiDE--------QHRFGV~ 444 (721)
T TIGR00643 433 VIIDE--------QHRFGVE 444 (721)
T ss_pred EEEEC--------CCCCHHH
T ss_conf 89932--------3356078