HHsearch alignment for GI: 254780601 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=99.62 E-value=1.4e-14 Score=117.30 Aligned_cols=329 Identities=22% Similarity=0.356 Sum_probs=210.1
Q ss_pred HHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEC--CCHHHHHHHHHHH-HHHHHHCC
Q ss_conf 999999997599-6999928987468999999999861042122556882799984--9989999999999-99854469
Q gi|254780601|r 27 QEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIA--PTRELAVQVGREL-EWLYAKTG 102 (573)
Q Consensus 27 Q~~~ip~~l~g~-d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~--PTrELa~Qv~~~~-~~l~~~~~ 102 (573)
T Consensus 73 kRedI~~AI~~nQVviiAGETGSGKTT--QLPKICL---ELG-----rG~~GlIGHTQPRRlAAR~VA~R~AeELgtplG 142 (1320)
T TIGR01967 73 KREDIAKAIAENQVVIIAGETGSGKTT--QLPKICL---ELG-----RGSRGLIGHTQPRRLAARSVAERVAEELGTPLG 142 (1320)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCCCC--CCHHHHH---HHC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 189999999848989997244876202--3216777---542-----787654124714688999999999998388988
Q ss_pred CEEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC-CCCCHHH-HHHHHHHHHCCCCC
Q ss_conf 879999889987999996128975998223101332100012246431899961311-0010012-35788875214334
Q gi|254780601|r 103 VVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE-MLDLGFR-DDIEFILDSSPKKR 180 (573)
Q Consensus 103 ~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~-ml~~gf~-~~i~~i~~~~p~~~ 180 (573)
T Consensus 143 e~VGYk---VRF~D~---v~~~t~VKLmTDGiLLAE~Q~DR-fL~~YDTIIIDEAHERSLNIDFLLGYLK~lL~rRPDLK 215 (1320)
T TIGR01967 143 ELVGYK---VRFEDQ---VSSNTLVKLMTDGILLAETQQDR-FLERYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLK 215 (1320)
T ss_pred CCCCCE---EEECCC---CCCCCEEEEHHHHHHHHHHHHHH-HHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 613203---663142---68854363032235899852002-22106733651123112338899988876326688652
Q ss_pred CEEEEECCCCCCCHHHHHHHCCC-----CCCCCCCCCCCCCCCCCHHCCC----------CCCCHHHHHHHHCCC---CC
Q ss_conf 22563111122200111121012-----3333233323256652000000----------000002455420010---23
Q gi|254780601|r 181 RMLMFSATISPAITTLAKNYQKD-----AVRVNIASENRQHSDIDYRAVL----------VALSDRDNAIVNILR---YH 242 (573)
Q Consensus 181 q~~l~SAT~~~~i~~l~~~~~~~-----p~~i~~~~~~~~~~~i~~~~~~----------v~~~~k~~~l~~ll~---~~ 242 (573)
T Consensus 216 -iIITSATID~--ERFs~HFn~AeGkPaP-IIEVSGRTyPV-e~RYRPL~~~~~~~Gnqi~~d~d~~~ai~~AvdEL~~e 290 (1320)
T TIGR01967 216 -IIITSATIDP--ERFSRHFNNAEGKPAP-IIEVSGRTYPV-EVRYRPLVEEQEDDGNQIVIDLDQLEAILAAVDELVAE 290 (1320)
T ss_pred -EEEECCCCCH--HHHHHHHCCCCCCCCC-EEEECCCCCCC-CEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf -5740023574--4687862278889887-55527854665-11116876444887770410112788999999999742
Q ss_pred C------CCEEEEECCCHHHHHHHHHHHHHCC---CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
Q ss_conf 5------6416775130233456555554226---663010489999999999866544881499853865001457887
Q gi|254780601|r 243 G------AKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313 (573)
Q Consensus 243 ~------~~~~ivF~~t~~~~~~l~~~L~~~g---~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v 313 (573)
T Consensus 291 ~~~eGkGPGDiLIFlpGEREIRDaAE~L~k~~~rhtEIlPLYARLS~~EQ~RvF~pH-sG-RRIVLaTNVAETSLTVPGI 368 (1320)
T TIGR01967 291 GPDEGKGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH-SG-RRIVLATNVAETSLTVPGI 368 (1320)
T ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCHHHCCHHHCCCCCCCC-CC-CEEEEECCHHHHHCCCCCC
T ss_conf 755578997267637888636899999844687870440552215864474400685-96-2345330101330578871
Q ss_pred CEEEEECCCC-CH-----------------HHHHHHHCCCCCCCCCCEEEEEECHHHH--------------HHHHHHHH
Q ss_conf 3389705887-47-----------------8999860301037888602564059999--------------99999999
Q gi|254780601|r 314 ELVIHAELSS-NP-----------------ENLLHRSGRTGRAGRKGMSVFVIPQNMQ--------------RRAERLFR 361 (573)
Q Consensus 314 ~~Vin~d~P~-~~-----------------~~yvHR~GRtgRag~~G~ai~l~~~~e~--------------~~~~~i~~ 361 (573)
T Consensus 369 ~YVIDtGtARiSRYS~RTKVQRLPIEpISQASANQRkGRCGRV-~~GICIRLYSE~DFnsRP~FTDPEILRTNLAsVIL~ 447 (1320)
T TIGR01967 369 RYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-APGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQ 447 (1320)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCC-CCCEEEECCCHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 1135688532000100330133676603122320068875414-777047557757340787545720767758999999
Q ss_pred HHHC------CCCCCCCCCHHHHHH
Q ss_conf 8506------641056899999888
Q gi|254780601|r 362 EANV------SVVWEPAPSVEAIRE 380 (573)
Q Consensus 362 ~~~~------~~~~~~~Ps~eeI~~ 380 (573)
T Consensus 448 M~aL~LGDI~~FPFieaPd~r~IrD 472 (1320)
T TIGR01967 448 MLALRLGDIAAFPFIEAPDPRAIRD 472 (1320)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 8741477865667888747865677