HHsearch alignment for GI: 254780601 and conserved domain: TIGR01970
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=99.68 E-value=4.5e-15 Score=120.56 Aligned_cols=304 Identities=25% Similarity=0.337 Sum_probs=205.2
Q ss_pred HHHHHHHC----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH-HHHHCCC
Q ss_conf 99999975----996999928987468999999999861042122556882799984998999999999999-8544698
Q gi|254780601|r 29 AILNPDLR----EKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW-LYAKTGV 103 (573)
Q Consensus 29 ~~ip~~l~----g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~-l~~~~~~ 103 (573)
T Consensus 5 ~vLP~Lr~al~~~~~vvL~APpGAGKsT~~PLaLL~~pW~~~--------~kIimLEPRRlAAR~~A~rlA~~LgE~VG~ 76 (858)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPWLIG--------GKIIMLEPRRLAARSAAQRLASQLGEEVGD 76 (858)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC--------CEEEEECCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 676999998611765064167224711058899766264348--------807874744789999999999970889886
Q ss_pred EEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCC-C----CCCHHHHHHHHHHHHCCC
Q ss_conf 79999889987999996128975998223101332100012246431899961311-0----010012357888752143
Q gi|254780601|r 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE-M----LDLGFRDDIEFILDSSPK 178 (573)
Q Consensus 104 ~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~-m----l~~gf~~~i~~i~~~~p~ 178 (573)
T Consensus 77 tV-----GyRvR~en-kVs~~TRlEvVTEGiLTRMlQ~DP-~L~GVg~liFDEFHERsL~aDLaLALaLdVQs~L---Rd 146 (858)
T TIGR01970 77 TV-----GYRVRLEN-KVSARTRLEVVTEGILTRMLQDDP-ELEGVGLLIFDEFHERSLDADLALALALDVQSAL---RD 146 (858)
T ss_pred CC-----CEEEECCC-CCCCCCCEEEEECCHHHHHCCCCC-CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHH---CC
T ss_conf 20-----40577113-258775457872326877401688-8453523231102243467889999988533431---06
Q ss_pred C--CCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC-CCCCHHH-----HHHHHCCCCCCCCE----
Q ss_conf 3--4225631111222001111210123333233323256652000000-0000024-----55420010235641----
Q gi|254780601|r 179 K--RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVL-VALSDRD-----NAIVNILRYHGAKN---- 246 (573)
Q Consensus 179 ~--~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~~~~~~~~i~~~~~~-v~~~~k~-----~~l~~ll~~~~~~~---- 246 (573)
T Consensus 147 DPPLkil~MSATLdg~--rLs-~LL~~Ap~v--~S~GR~fP-Ve~rY~~P~~~~e~l~~~~~r~v~~~La~-~~GSGPqd 219 (858)
T TIGR01970 147 DPPLKILIMSATLDGE--RLS-SLLPDAPVV--ESEGRSFP-VEIRYLPPLREDERLEDRVSRAVEHALAE-ESGSGPQD 219 (858)
T ss_pred CCCCEEHHCCCCCHHH--HHH-HHCCCCCEE--EECCCCCC-EECCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCC
T ss_conf 8640000000263279--999-743302642--00787876-11022767875553347899999999961-67886330
Q ss_pred EEEECCCHHHHHHHHHHHHHC-C----CCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEE----
Q ss_conf 677513023345655555422-6----6630104899999999998665448814998538650014578873389----
Q gi|254780601|r 247 AIVFCSTRASVSRFTKVLAEH-L----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI---- 317 (573)
Q Consensus 247 ~ivF~~t~~~~~~l~~~L~~~-g----~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vi---- 317 (573)
T Consensus 220 ~LvFLPG~aEI~Rv~~~L~e~L~~rs~v~lcPLYG~L~~~aQ~~AI~P~a~GrRKVVLATNiAEtSLTIeGvRvViDsGl 299 (858)
T TIGR01970 220 VLVFLPGQAEIRRVQEQLAERLDARSEVLLCPLYGELELAAQDRAIKPAAAGRRKVVLATNIAETSLTIEGVRVVIDSGL 299 (858)
T ss_pred HHEECCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCCCEEEEEHHHHHHHEEECCEEEEEECCC
T ss_conf 10016877789999999999751787100057678889789998708774667343420001222100176358871565
Q ss_pred ----EECCCCCH----------HHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHH
Q ss_conf ----70588747----------899986030103788860256405999999999
Q gi|254780601|r 318 ----HAELSSNP----------ENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAER 358 (573)
Q Consensus 318 ----n~d~P~~~----------~~yvHR~GRtgRag~~G~ai~l~~~~e~~~~~~ 358 (573)
T Consensus 300 ~R~arFDP~sG~TRL~~~RisqASA~QRAGRAGR-lepGvc~RLw~~~q~~~l~~ 353 (858)
T TIGR01970 300 ARVARFDPKSGITRLETQRISQASATQRAGRAGR-LEPGVCYRLWSEEQHKRLAA 353 (858)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCHHEECCCHHHHHHHHC
T ss_conf 5676347888740244578897337651263322-11141112278689886320