HHsearch alignment for GI: 254780601 and conserved domain: TIGR02562
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3, Yersinia-type; InterPro: IPR013395 The helicase encoded in many CRISPR-associated (cas) gene clusters is designated Cas3. The Yersinia-type helicase Cas3 proteins differ from the more common Cas3 proteins by being considerably larger, though they still share a number of motifs, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc..
Probab=98.35 E-value=1.2e-06 Score=64.00 Aligned_cols=334 Identities=22% Similarity=0.308 Sum_probs=173.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 59969999289874689999999998610421225568827999849989999999999998544698799998899879
Q gi|254780601|r 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVH 115 (573)
Q Consensus 36 ~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~ 115 (573)
T Consensus 442 ~G~f~vN~AsTGcGKT~aNa-r~~yaL~~~~------~G~R~a~ALgLR~LTLQTG~ALk~~L~L~d~~lAv~iG~~~~~ 514 (1153)
T TIGR02562 442 QGAFGVNMASTGCGKTLANA-RLMYALRDDK------QGLRFAIALGLRSLTLQTGSALKKRLNLSDDDLAVLIGGTAVK 514 (1153)
T ss_pred CCCEEEECCCCCCHHHHHHH-HHHHCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHH
T ss_conf 79469862646843799999-9986177888------8740013432246788888999974178857636786528889
Q ss_pred H----HHHHHC----C-------------------------------------------CCEEEEECCCCHHHHHH----
Q ss_conf 9----999612----8-------------------------------------------97599822310133210----
Q gi|254780601|r 116 R----ERRDLQ----N-------------------------------------------GAHIVVGTPGRLCDHIR---- 140 (573)
Q Consensus 116 ~----q~~~l~----~-------------------------------------------~~~iiv~TPgrl~d~~~---- 140 (573)
T Consensus 515 ~Lf~~~~ek~e~~~~~gs~s~~~f~~~~~~~~~~~~~~~~~~~~~~~~ls~d~k~~~lL~aP~lvcT----iDhLi~A~E 590 (1153)
T TIGR02562 515 KLFDLSKEKIEQVDEDGSESAEKFLEEGQDCNLVDYDGALDTEELLSRLSKDDKLKKLLAAPVLVCT----IDHLIPATE 590 (1153)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHH----HHHCCCCCC
T ss_conf 9999877652020035688615550432116863236775414675431025455466525126655----432004677
Q ss_pred --CCC------CCCCCCEEEEEECCCCCCCCHHH-HHHHHHHHHCC----CCCCEEEEECCCCCCCHH-HHHHHC-----
Q ss_conf --001------22464318999613110010012-35788875214----334225631111222001-111210-----
Q gi|254780601|r 141 --GKG------LNISHLKAVVLDEADEMLDLGFR-DDIEFILDSSP----KKRRMLMFSATISPAITT-LAKNYQ----- 201 (573)
Q Consensus 141 --~~~------l~l~~v~~lVlDEaD~ml~~gf~-~~i~~i~~~~p----~~~q~~l~SAT~~~~i~~-l~~~~~----- 201 (573)
T Consensus 591 s~rgG~~i~p~LRll-sSDLiLDE~D-----dy~~~dLpAl~RLV~lAgL~GsrVllSSATL~p~lv~~lF~AY~aGr~~ 664 (1153)
T TIGR02562 591 SVRGGHHIAPMLRLL-SSDLILDEPD-----DYEREDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFKAYEAGRKI 664 (1153)
T ss_pred CCCCCEEHHHHHHHH-HHHHEECCCC-----CCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 544561078899875-3232004888-----8871234899999999998444142221366088999999999999999
Q ss_pred --------CCCCCCCCCC--CCCC-CCCCCHH--C--------------------------CCCCCC-------------
Q ss_conf --------1233332333--2325-6652000--0--------------------------000000-------------
Q gi|254780601|r 202 --------KDAVRVNIAS--ENRQ-HSDIDYR--A--------------------------VLVALS------------- 229 (573)
Q Consensus 202 --------~~p~~i~~~~--~~~~-~~~i~~~--~--------------------------~~v~~~------------- 229 (573)
T Consensus 665 y~~~~G~~~~~~~~cc~w~de~~~~~~~~~q~~~F~~~h~~F~~~r~~~L~~~p~~R~AeLLsLS~~kpr~Gn~s~~~~l 744 (1153)
T TIGR02562 665 YQALKGQPKKPLNICCAWVDEPQVVQADCNQKEEFIQRHQDFVRKRAEKLAKKPVRRLAELLSLSSLKPRKGNESVYLAL 744 (1153)
T ss_pred HHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 99746798886055653246467999864216999999888999999986267622302003688888656505679999
Q ss_pred -----HHHHHHHHCCCCCCC---CE---EEEECCCHHHHHHHHHHHHH----CC---CC--CCCCCCCCCHHHHHH----
Q ss_conf -----024554200102356---41---67751302334565555542----26---66--301048999999999----
Q gi|254780601|r 230 -----DRDNAIVNILRYHGA---KN---AIVFCSTRASVSRFTKVLAE----HL---FQ--VVALSGELSQQERSN---- 285 (573)
Q Consensus 230 -----~k~~~l~~ll~~~~~---~~---~ivF~~t~~~~~~l~~~L~~----~g---~~--~~~lhg~~~q~~R~~---- 285 (573)
T Consensus 745 a~~ll~~~~~LH~~h~~t~p~~~K~vSvGLiR~ANI~~~~~LAq~Ly~~~~~~~fadyqiHlc~YHa~~~L~~Rsy~E~r 824 (1153)
T TIGR02562 745 AESLLEGALRLHQLHAQTDPKSEKKVSVGLIRVANIDPLIRLAQALYALLAEEKFADYQIHLCVYHAQDPLLLRSYIERR 824 (1153)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEHHCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHH
T ss_conf 99999999999860266777678778886154403678999999987405400577136665303130289999999998
Q ss_pred ---HHHHHHCCC---------------------------EEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCC
Q ss_conf ---986654488---------------------------14998538650014578873389705887478999860301
Q gi|254780601|r 286 ---ALQMMRDGR---------------------------ARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335 (573)
Q Consensus 286 ---~~~~fr~g~---------------------------~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRt 335 (573)
T Consensus 825 LD~~L~Rh~~GkkrktGn~~l~q~~ei~~~l~~~~~~~~lFivlatpV~EVGRDHD-YdWAi~--dpSSmrS~iQlAGRV 901 (1153)
T TIGR02562 825 LDKLLTRHKPGKKRKTGNEQLFQDDEIEDLLQNSPAKNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRV 901 (1153)
T ss_pred HHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCEECCCCCC-CCHHHH--CHHHHHHHHHHCCCC
T ss_conf 87750345776423331465313088998863160015864897167123067776-014452--324566787731643
Q ss_pred CCCCCCCEE----EEEECHHHHHHHH-HHHHHHHCCCCCCCC---CCHHH-----HHHHHHHHHHHH
Q ss_conf 037888602----5640599999999-999985066410568---99999-----888899865544
Q gi|254780601|r 336 GRAGRKGMS----VFVIPQNMQRRAE-RLFREANVSVVWEPA---PSVEA-----IRERDAQRILQD 389 (573)
Q Consensus 336 gRag~~G~a----i~l~~~~e~~~~~-~i~~~~~~~~~~~~~---Ps~ee-----I~~~~~~~l~~~ 389 (573)
T Consensus 902 ~RHR~e~~~e~~N~~il~~N~r~~~~rd~ekrkqqskq~~~vY~~PGFE~~~~~~l~th~l~~L~~~ 968 (1153)
T TIGR02562 902 RRHRLEKVQEQPNIVILQKNYRALERRDIEKRKQQSKQKKPVYIRPGFETERVSRLSTHDLDQLLEE 968 (1153)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 0014675456623001045788887666677641057887256358866554200312338860563