HHsearch alignment for GI: 254780601 and conserved domain: TIGR02785
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=96.15 E-value=0.014 Score=36.60 Aligned_cols=102 Identities=23% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCEEEEECCCHHHHH----HHHHHHHHH
Q ss_conf 89899999999975996999928987468999999999861042122-5568827999849989999----999999998
Q gi|254780601|r 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRF-SPASAPLALAIAPTRELAV----QVGRELEWL 97 (573)
Q Consensus 23 pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~-~~~~~~~~lil~PTrELa~----Qv~~~~~~l 97 (573)
T Consensus 2 wT~~Q~~AI~--~~G~nILVsAsAGSGKTaV----LVERii~~i~~gE~pvdiDrLLVVTFTnaAA~EMK~Ri~~~l~k~ 75 (1295)
T TIGR02785 2 WTDEQWQAIY--DRGQNILVSASAGSGKTAV----LVERIIKKILRGENPVDIDRLLVVTFTNAAAREMKERIEEALQKE 75 (1295)
T ss_pred CCHHHHHHHH--HCCCCEEEEEECCCCCHHH----HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8788899996--3688647653226661478----999999996478877020210367888999999999999999997
Q ss_pred HHHCC----CEEEEEECCCCHHHHHHHHCCCCEEEEECCC
Q ss_conf 54469----8799998899879999961289759982231
Q gi|254780601|r 98 YAKTG----VVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133 (573)
Q Consensus 98 ~~~~~----~~v~~~~gg~~~~~q~~~l~~~~~iiv~TPg 133 (573)
T Consensus 76 l~~~~~d~P~~~ta~~~~~hl~~QL~lL~---~A~ISTlh 112 (1295)
T TIGR02785 76 LAQEPDDDPERRTAVDNSKHLRRQLALLN---KANISTLH 112 (1295)
T ss_pred HCCCCCCCCHHHHCCHHHHHHHHHHHHCC---CCCCHHHH
T ss_conf 43688887123204437899999996446---76510457