HHsearch alignment for GI: 254780601 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.6e-29 Score=217.76 Aligned_cols=287 Identities=16% Similarity=0.217 Sum_probs=177.7
Q ss_pred HHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC---
Q ss_conf 9999999975996--99992898746899999999986104212255688279998499899999999999985446---
Q gi|254780601|r 27 QEAILNPDLREKD--VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT--- 101 (573)
Q Consensus 27 Q~~~ip~~l~g~d--~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~--- 101 (573)
T Consensus 2 q~~~~~~~~~~~~~~ivitAPTgsGKT~Aa~lp~l~~------------~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~ 69 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC------------CCCEEEECCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6899999976899869998999856999999999738------------9879997778999999999999999874423
Q ss_pred -CCEEEEEECCCCHH-------------------H-HHHHHCCCCEEEEECCCCHHHHHH-----CCC---CCCCCCEEE
Q ss_conf -98799998899879-------------------9-999612897599822310133210-----001---224643189
Q gi|254780601|r 102 -GVVVAVCIGGVSVH-------------------R-ERRDLQNGAHIVVGTPGRLCDHIR-----GKG---LNISHLKAV 152 (573)
Q Consensus 102 -~~~v~~~~gg~~~~-------------------~-q~~~l~~~~~iiv~TPgrl~d~~~-----~~~---l~l~~v~~l 152 (573)
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~V 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEE
T ss_conf 46440211464323344465555343445410256654302589909992889999997620136510399998516747
Q ss_pred EEECCCCCCCCHHHHH----HHH--HHHHCCCCCCEEEEECCCCCCCHHHHHHHC--CCCCC------------CCCCCC
Q ss_conf 9961311001001235----788--875214334225631111222001111210--12333------------323332
Q gi|254780601|r 153 VLDEADEMLDLGFRDD----IEF--ILDSSPKKRRMLMFSATISPAITTLAKNYQ--KDAVR------------VNIASE 212 (573)
Q Consensus 153 VlDEaD~ml~~gf~~~----i~~--i~~~~p~~~q~~l~SAT~~~~i~~l~~~~~--~~p~~------------i~~~~~ 212 (573)
T Consensus 150 ViDEiH-~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 150 IFDEFH-LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEEEEH-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 756200-0067620899999999999863368980899827998035789863234576434565444456787433345
Q ss_pred C------CCCCCCCHHCCCCCCCHHHHH-------HHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHC--CCCCCCCCCC
Q ss_conf 3------256652000000000002455-------420010235641677513023345655555422--6663010489
Q gi|254780601|r 213 N------RQHSDIDYRAVLVALSDRDNA-------IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH--LFQVVALSGE 277 (573)
Q Consensus 213 ~------~~~~~i~~~~~~v~~~~k~~~-------l~~ll~~~~~~~~ivF~~t~~~~~~l~~~L~~~--g~~~~~lhg~ 277 (573)
T Consensus 229 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELI-PAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred CCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCC
T ss_conf 543455444675011234-6630446799999999999999852671799955899999999999863364114554255
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCC
Q ss_conf 99999999986654488149985386500145788733897058874789998603010
Q gi|254780601|r 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTG 336 (573)
Q Consensus 278 ~~q~~R~~~~~~fr~g~~~vLV~TDvaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtg 336 (573)
T Consensus 308 ~~~~~re------k~~~~~~vVaTsaLElGIDi-~~d~~i~--~~~~v~sl~QR~GRaG 357 (357)
T TIGR03158 308 APKKDRE------RAMQFDILLGTSTVDVGVDF-KRDWLIF--SARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHH------CCCCCCEEEECCCCEEEEEC-CCCEEEE--CCCCHHHHHHCCCCCC
T ss_conf 6188985------04899999987701035611-7898995--8987888997266799