HHsearch alignment for GI: 254780601 and conserved domain: cd00079

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=99.91  E-value=1.5e-24  Score=184.25  Aligned_cols=123  Identities=35%  Similarity=0.641  Sum_probs=114.5

Q ss_pred             CCCCCHHHHHHHHCCCC--CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             00000024554200102--3564167751302334565555542266630104899999999998665448814998538
Q gi|254780601|r  225 LVALSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD  302 (573)
Q Consensus       225 ~v~~~~k~~~l~~ll~~--~~~~~~ivF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~TD  302 (573)
T Consensus         7 ~~~~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~   86 (131)
T cd00079           7 LPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD   86 (131)
T ss_pred             EECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEE
T ss_conf             93866999999999999997899099997889999999999955899899998999999999999997754010488751


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf             650014578873389705887478999860301037888602564
Q gi|254780601|r  303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV  347 (573)
Q Consensus       303 vaaRGiDi~~v~~Vin~d~P~~~~~yvHR~GRtgRag~~G~ai~l  347 (573)
T Consensus        87 ~~~~Gldl~~~~~vI~~~~~~s~~~~~Q~~GR~~R~gq~~~~~~~  131 (131)
T cd00079          87 VIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL  131 (131)
T ss_pred             CCEECCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             120036610287999978996989999897216708996379979