HHsearch alignment for GI: 254780601 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=95.58 E-value=0.19 Score=28.86 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=52.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHH---C-CCCEEEEECCCCHHHHHHCCCCCCCCCE
Q ss_conf 27999849989999999999998544698799998899879999961---2-8975998223101332100012246431
Q gi|254780601|r 75 PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL---Q-NGAHIVVGTPGRLCDHIRGKGLNISHLK 150 (573)
Q Consensus 75 ~~~lil~PTrELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q~~~l---~-~~~~iiv~TPgrl~d~~~~~~l~l~~v~ 150 (573)
T Consensus 29 ~kviIF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t~-----~~~~G-ldl~~~~ 98 (131)
T cd00079 29 GKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATD-----VIARG-IDLPNVS 98 (131)
T ss_pred CEEEEEECCHHHHHHHHHHHHH----CCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEEE-----CCEEC-CCCCCCC
T ss_conf 9099997889999999999955----899899998999999999999997754010488751-----12003-6610287
Q ss_pred EEEEECC
Q ss_conf 8999613
Q gi|254780601|r 151 AVVLDEA 157 (573)
Q Consensus 151 ~lVlDEa 157 (573)
T Consensus 99 ~vI~~~~ 105 (131)
T cd00079 99 VVINYDL 105 (131)
T ss_pred EEEEECC
T ss_conf 9999789