HHsearch alignment for GI: 254780601 and conserved domain: cd00268
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.94 E-value=0.31 Score=27.52 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=52.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-----CCCCC-CCCCCC
Q ss_conf 564167751302334565555542----26663010489999999999866544881499853-----86500-145788
Q gi|254780601|r 243 GAKNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT-----DVAAR-GIDLPD 312 (573)
Q Consensus 243 ~~~~~ivF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T-----DvaaR-GiDi~~ 312 (573)
T Consensus 68 ~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlI~TPgrl~~~l~~~~~~l~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-GPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH---HC-CCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf 8966999968799999999999985057983899983898879999998---53-8759996818999999848865132
Q ss_pred CCEEEE
Q ss_conf 733897
Q gi|254780601|r 313 LELVIH 318 (573)
Q Consensus 313 v~~Vin 318 (573)
T Consensus 144 l~~lVl 149 (203)
T cd00268 144 VKYLVL 149 (203)
T ss_pred CCEEEE
T ss_conf 248999