HHsearch alignment for GI: 254780601 and conserved domain: cd00268

>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.94  E-value=0.31  Score=27.52  Aligned_cols=72  Identities=21%  Similarity=0.378  Sum_probs=52.0

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHH----CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-----CCCCC-CCCCCC
Q ss_conf             564167751302334565555542----26663010489999999999866544881499853-----86500-145788
Q gi|254780601|r  243 GAKNAIVFCSTRASVSRFTKVLAE----HLFQVVALSGELSQQERSNALQMMRDGRARVCIAT-----DVAAR-GIDLPD  312 (573)
Q Consensus       243 ~~~~~ivF~~t~~~~~~l~~~L~~----~g~~~~~lhg~~~q~~R~~~~~~fr~g~~~vLV~T-----DvaaR-GiDi~~  312 (573)
T Consensus        68 ~~~~alil~PTrELa~Qi~~~~~~l~~~~~i~~~~~~gg~~~~~~~~~l---~~-~~~IlI~TPgrl~~~l~~~~~~l~~  143 (203)
T cd00268          68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-GPHIVVATPGRLLDLLERGKLDLSK  143 (203)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH---HC-CCEEEEECCHHHHHHHHCCCCCCCC
T ss_conf             8966999968799999999999985057983899983898879999998---53-8759996818999999848865132


Q ss_pred             CCEEEE
Q ss_conf             733897
Q gi|254780601|r  313 LELVIH  318 (573)
Q Consensus       313 v~~Vin  318 (573)
T Consensus       144 l~~lVl  149 (203)
T cd00268         144 VKYLVL  149 (203)
T ss_pred             CCEEEE
T ss_conf             248999