HHsearch alignment for GI: 254780601 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=96.56 E-value=0.0078 Score=38.23 Aligned_cols=47 Identities=28% Similarity=0.198 Sum_probs=35.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 6999928987468999999999861042122556882799984998999999999999
Q gi|254780601|r 39 DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 (573)
Q Consensus 39 d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~ 96 (573)
T Consensus 1 H~lvig~tGsGKt~~~vip~ll~~-----------~~s~vv~D~Kgel~~~t~~~~~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-----------CCCEEEEECCHHHHHHHHHHHHH
T ss_conf 979988999973189999999818-----------99889994878999999999998