HHsearch alignment for GI: 254780601 and conserved domain: cd01127

>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.

Probab=94.57  E-value=0.057  Score=32.46  Aligned_cols=72  Identities=18%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             HHHHHHHH-HCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHH
Q ss_conf             89999999-78798789899999999975996999928987468999999999861042122556882799984998999
Q gi|254780601|r    9 QVIGEALS-ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA   87 (573)
Q Consensus         9 ~~l~~~l~-~~g~~~pt~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa   87 (573)
T Consensus        13 ~~l~~~~~~~~~~~~~~~i~~~p~p~~~e~~H~lv~G~tGsGKT~~i-~~li~~~~~rg--------~~~II~DpkGe~~   83 (410)
T cd01127          13 RKLARKLRKKDGKASPITIAGLPFPKDAEEAHTMIIGTTGTGKTTQI-RELLASIRARG--------DRAIIYDPNGGFV   83 (410)
T ss_pred             HHHHHHHHHHCCCCCCEEECCCCCCCCHHHCCEEEECCCCCCHHHHH-HHHHHHHHHCC--------CEEEEEECCCHHH
T ss_conf             99999999863899983689862786520274799889999889999-99999999869--------9099995885499


Q ss_pred             HH
Q ss_conf             99
Q gi|254780601|r   88 VQ   89 (573)
Q Consensus        88 ~Q   89 (573)
T Consensus        84 ~~   85 (410)
T cd01127          84 SK   85 (410)
T ss_pred             HH
T ss_conf             99