HHsearch alignment for GI: 254780601 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=100.00 E-value=6.5e-35 Score=253.99 Aligned_cols=166 Identities=46% Similarity=0.644 Sum_probs=153.8
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98999999999759969999289874689999999998610421225568827999849989999999999998544698
Q gi|254780601|r 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGV 103 (573)
Q Consensus 24 t~iQ~~~ip~~l~g~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~~l~~~~~~ 103 (573)
T Consensus 1 ~~~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~------~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~ 74 (167)
T pfam00270 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNP------DGPQALVLAPTRELAEQIYEELKKLGKYLGL 74 (167)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC------CCCEEEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9459999999976997899889997589999999999987477------8987999906088888999886432102676
Q ss_pred EEEEEECCCCHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 79999889987999996128975998223101332100012246431899961311001001235788875214334225
Q gi|254780601|r 104 VVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRML 183 (573)
Q Consensus 104 ~v~~~~gg~~~~~q~~~l~~~~~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~ 183 (573)
T Consensus 75 ~~~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~~~g~~~~~il~~l~~~~q~v 154 (167)
T pfam00270 75 KVALLYGGDSPKEQLRKLKKGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQGFGDDLEEILRRLPPKRQIL 154 (167)
T ss_pred CEEEECCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 40464178617889876405770799478999999980331211003899880886733582999999998579999789
Q ss_pred EEECCCCCCCHH
Q ss_conf 631111222001
Q gi|254780601|r 184 MFSATISPAITT 195 (573)
Q Consensus 184 l~SAT~~~~i~~ 195 (573)
T Consensus 155 ~~SAT~~~~~~~ 166 (167)
T pfam00270 155 LLSATLPRNVED 166 (167)
T ss_pred EEECCCCHHHHH
T ss_conf 997269977854