HHsearch alignment for GI: 254780601 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=94.72 E-value=0.34 Score=27.18 Aligned_cols=126 Identities=26% Similarity=0.303 Sum_probs=65.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCC-HHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH-
Q ss_conf 99992898746899999999986104212255688279998499-8999999999999854469879999889987999-
Q gi|254780601|r 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT-RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE- 117 (573)
Q Consensus 40 ~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PT-rELa~Qv~~~~~~l~~~~~~~v~~~~gg~~~~~q- 117 (573)
T Consensus 4 i~lvGptGvGKTTTia-KLAa~~~~~~-------~~V~lit~Dt~R~gA---~eQL~~ya~~l~v~~~~~~~~~d~~~~~ 72 (196)
T pfam00448 4 ILLVGLQGSGKTTTIA-KLAAYLKKQG-------KKVLLVAADTFRAAA---IEQLKQLAERLGVPVFGSGTGSDPAAVA 72 (196)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHCC-------CEEEEEECCCCCHHH---HHHHHHHHHHCCCEEEECCCCCCHHHHH
T ss_conf 9998999998899999-9999999779-------928999758776889---9999999986398178148777878999
Q ss_pred HHHH----CCCCE-EEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 9961----28975-998223101332100012246431899961311001001235788875214334225631111222
Q gi|254780601|r 118 RRDL----QNGAH-IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192 (573)
Q Consensus 118 ~~~l----~~~~~-iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~~~p~~~q~~l~SAT~~~~ 192 (573)
T Consensus 73 ~~~l~~~~~~~~D~IlIDTaGr~~~-----------------d~~-------~~~el~~~~~~~~~~~~~LVl~a~~~~~ 128 (196)
T pfam00448 73 FDAVEKAKAENYDVVLVDTAGRLQN-----------------DKN-------LMDELKKIKRVIAPDEVLLVLDATTGQN 128 (196)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCC-----------------CHH-------HHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 9999998846899999989998747-----------------677-------8999999985228730289985677821
Q ss_pred CHHHHHHH
Q ss_conf 00111121
Q gi|254780601|r 193 ITTLAKNY 200 (573)
Q Consensus 193 i~~l~~~~ 200 (573)
T Consensus 129 ~~~~~~~f 136 (196)
T pfam00448 129 ALNQAKAF 136 (196)
T ss_pred HHHHHHHH
T ss_conf 37899987