HHsearch alignment for GI: 254780601 and conserved domain: smart00487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.94 E-value=3.5e-25 Score=188.54 Aligned_cols=188 Identities=36% Similarity=0.495 Sum_probs=162.2
Q ss_pred HCCCCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 787987898999999999759-9699992898746899999999986104212255688279998499899999999999
Q gi|254780601|r 17 ERGYVNLTSVQEAILNPDLRE-KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 (573)
Q Consensus 17 ~~g~~~pt~iQ~~~ip~~l~g-~d~i~~a~TGsGKT~af~lp~l~~l~~~~~~~~~~~~~~~lil~PTrELa~Qv~~~~~ 95 (573)
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~li~~P~~~l~~q~~~~~~ 75 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-------CCEEEEEECCHHHHHHHHHHHH
T ss_conf 137999998899999999838998899899996099999999999863389-------9759999085999999998860
Q ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHCCCC-EEEEECCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 985446987999988998799999612897-5998223101332100012246431899961311001001235788875
Q gi|254780601|r 96 WLYAKTGVVVAVCIGGVSVHRERRDLQNGA-HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILD 174 (573)
Q Consensus 96 ~l~~~~~~~v~~~~gg~~~~~q~~~l~~~~-~iiv~TPgrl~d~~~~~~l~l~~v~~lVlDEaD~ml~~gf~~~i~~i~~ 174 (573)
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HCCCCCEEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCCCCHHHHHHHHH
T ss_conf 10210204455652477379999999759998999558999999972754525431999989677512570999999999
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 2143342256311112220011112101233332333
Q gi|254780601|r 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIAS 211 (573)
Q Consensus 175 ~~p~~~q~~l~SAT~~~~i~~l~~~~~~~p~~i~~~~ 211 (573)
T Consensus 156 ~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 6799997899924898689999999789978998089