RPSBLAST alignment for GI: 254780601 and conserved domain: pfam03880
>gnl|CDD|146487 pfam03880, DbpA, DbpA RNA binding domain. This RNA binding domain is found at the C-terminus of a number of DEAD helicase proteins. It is sufficient to confer specificity for hairpin 92 of 23S rRNA, which is part of the ribosomal A-site. However, several members of this family lack specificity for 23S rRNA. These can proteins can generally be distinguished by a basic region that extends beyond this domain [Karl Kossen, unpublished data]. Length = 74
Score = 65.9 bits (162), Expect = 3e-11
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
++VG K ++ + GI IG I + + +FVEV D D
Sbjct: 1 VRLFINVGRKDGIRPGDIVGAIANEGGITGDDIGKIDIFDNFSFVEVPEDMAD 53