RPSBLAST alignment for GI: 254780601 and conserved domain: PRK11192
>gnl|CDD|183029 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional. Length = 434
Score = 213 bits (545), Expect = 8e-56
Identities = 125/343 (36%), Positives = 179/343 (52%), Gaps = 20/343 (5%)
Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
EAL ++GY T++Q + P L +DVL SA TG+GKT AF L LL R S
Sbjct: 14 EALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKS-- 71
Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
P L + PTRELA+QV + L T + +A GGV+ IVV TP
Sbjct: 72 GPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATP 131
Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI-SP 191
GRL +I+ + + ++ ++LDEAD MLD+GF DIE I + +++ L+FSAT+
Sbjct: 132 GRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGD 191
Query: 192 AITTLAKNYQKDAVRVNIASENRQHSDID---YRAVLVALSDRDNA------IVNILRYH 242
A+ A+ D V V R+ I YRA D+ + ++L+
Sbjct: 192 AVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRA--------DDLEHKTALLCHLLKQP 243
Query: 243 GAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
+IVF TR V L + L GE+ Q +R+ A++ + DGR V +ATD
Sbjct: 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD 303
Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
VAARGID+ D+ VI+ ++ + + LHR GRTGRAGRKG ++
Sbjct: 304 VAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAI 346