RPSBLAST alignment for GI: 254780601 and conserved domain: KOG0331
>gnl|CDD|35552 KOG0331, KOG0331, KOG0331, ATP-dependent RNA helicase [RNA processing and modification]. Length = 519
Score = 272 bits (697), Expect = 2e-73
Identities = 126/370 (34%), Positives = 201/370 (54%), Gaps = 9/370 (2%)
Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
+ + + +AL E+G+ T +Q L +D++ A+TGSGKT+A+ L L E
Sbjct: 98 LSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ 157
Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
+ S P+ L +APTRELAVQV E + GG + RDL+ G
Sbjct: 158 GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVD 217
Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR-MLMF 185
+V+ TPGRL D + LN+S + +VLDEAD MLD+GF I IL P+ R LMF
Sbjct: 218 VVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMF 277
Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHG 243
SAT + LA+++ + +++N+ ++ + +I + + + + +L
Sbjct: 278 SATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDIS 337
Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
+ + I+FC T+ + + L + VA+ G+ SQ ER L+ R+G++ V +A
Sbjct: 338 SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVA 397
Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAE 357
TDVAARG+D+PD++LVI+ + +N E+ +HR GRTGRAG+KG ++ F N + R
Sbjct: 398 TDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELI 457
Query: 358 RLFREANVSV 367
++ REA +V
Sbjct: 458 KVLREAGQTV 467