RPSBLAST alignment for GI: 254780601 and conserved domain: KOG0333
>gnl|CDD|35554 KOG0333, KOG0333, KOG0333, U5 snRNP-like RNA helicase subunit [RNA processing and modification]. Length = 673
Score = 206 bits (525), Expect = 1e-53
Identities = 121/375 (32%), Positives = 194/375 (51%), Gaps = 29/375 (7%)
Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTL 62
P + + + GY T +Q + L+ +D + A+TGSGKT AF + L S+L
Sbjct: 251 GFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSL 310
Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
+ P A+ +APTRELA Q+ E G+ IGG+S + L
Sbjct: 311 PPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLS 370
Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
G IV+ TPGRL D + + L ++ VVLDEAD M+D+GF D++ IL+ P
Sbjct: 371 MGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAK 430
Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
K R+ +MF+AT+ PA+ LA++Y + V V I S +
Sbjct: 431 PDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTP 490
Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
++ + +V+ ++ ++ IL + I+F +T+ K+L + ++V L G
Sbjct: 491 RVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGG 550
Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
SQ++R NAL R+G + +ATDVA RGID+P++ LVI+ +++ + E+ HR GRTGR
Sbjct: 551 KSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGR 610
Query: 338 AGRKGMSV-FVIPQN 351
AG+ G ++ F+ P +
Sbjct: 611 AGKSGTAISFLTPAD 625