RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase
protein [Candidatus Liberibacter asiaticus str. psy62]
(573 letters)
>gnl|CDD|30859 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 327 bits (839), Expect = 5e-90
Identities = 154/469 (32%), Positives = 235/469 (50%), Gaps = 18/469 (3%)
Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
+ + +AL + G+ T +Q A + L +DVL AQTG+GKT AF L L +
Sbjct: 35 GLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKI--- 91
Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKT-GVVVAVCIGGVSVHRERRDLQNG 124
+ AL +APTRELAVQ+ EL L G+ VAV GGVS+ ++ L+ G
Sbjct: 92 -LKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG 150
Query: 125 AHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
IVV TPGRL D I+ L++S ++ +VLDEAD MLD+GF DDIE IL + P R+ L+
Sbjct: 151 VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLL 210
Query: 185 FSATISPAITTLAKNYQKDAVRVNIASEN--RQHSDIDYRAVLV-ALSDRDNAIVNILRY 241
FSAT+ I LA+ Y D V + ++ E R I + V + ++ ++ +L+
Sbjct: 211 FSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKD 270
Query: 242 HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIAT 301
IVF T+ V + L + F+V AL G+L Q+ER AL+ +DG RV +AT
Sbjct: 271 EDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVAT 330
Query: 302 DVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQRRAERLF 360
DVAARG+D+PD+ VI+ +L +PE+ +HR GRTGRAGRKG+++ FV + ++ +R+
Sbjct: 331 DVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIE 390
Query: 361 REANVSV-VWEPAPSVEAIRERDAQRI-------LQDPLFLDSIQGDEKKMVDVLLAKHD 412
+ + P E + + + ++ +K ++ L +
Sbjct: 391 KRLERKLPSAVLLPLDEPEDAKLLKTTRPGLEEESDISDEIKKLKSSKKALLRGLGVRFT 450
Query: 413 PEKIAAGFLRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRD 461
K+ A + I P + D K +
Sbjct: 451 LSKLLANLGKEIPGAG-DAVTIDPELERRSPNSADDIEYILKGLSYRAE 498
>gnl|CDD|35552 KOG0331, KOG0331, KOG0331, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 519
Score = 272 bits (697), Expect = 2e-73
Identities = 126/370 (34%), Positives = 201/370 (54%), Gaps = 9/370 (2%)
Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
+ + + +AL E+G+ T +Q L +D++ A+TGSGKT+A+ L L E
Sbjct: 98 LSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ 157
Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
+ S P+ L +APTRELAVQV E + GG + RDL+ G
Sbjct: 158 GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVD 217
Query: 127 IVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRR-MLMF 185
+V+ TPGRL D + LN+S + +VLDEAD MLD+GF I IL P+ R LMF
Sbjct: 218 VVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMF 277
Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQ--HSDIDYRAVLVALSDRDNAIVNILRYHG 243
SAT + LA+++ + +++N+ ++ + +I + + + + +L
Sbjct: 278 SATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDIS 337
Query: 244 AKN---AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
+ + I+FC T+ + + L + VA+ G+ SQ ER L+ R+G++ V +A
Sbjct: 338 SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVA 397
Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ--RRAE 357
TDVAARG+D+PD++LVI+ + +N E+ +HR GRTGRAG+KG ++ F N + R
Sbjct: 398 TDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELI 457
Query: 358 RLFREANVSV 367
++ REA +V
Sbjct: 458 KVLREAGQTV 467
>gnl|CDD|35551 KOG0330, KOG0330, KOG0330, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 476
Score = 247 bits (632), Expect = 5e-66
Identities = 117/345 (33%), Positives = 197/345 (57%), Gaps = 8/345 (2%)
Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
P+++ EA E G+ T +Q + L +DV+ A+TGSGKT AF L + LL E
Sbjct: 69 HPELL-EACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP 127
Query: 67 DRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH 126
AL + PTRELA Q+ + E L + G+ VAV +GG+ + + L H
Sbjct: 128 ------KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPH 181
Query: 127 IVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
I+V TPGRL DH+ KG ++ LK +VLDEAD +LD+ F +++++IL P++R+ +F
Sbjct: 182 ILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLF 241
Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
SAT++ + L + + V+V ++S+ + + + V D+D +V +L
Sbjct: 242 SATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGN 301
Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
+ IVFC+T + +L FQ + L G++SQ +R AL + G + + TDVA+
Sbjct: 302 SVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVAS 361
Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
RG+D+P +++V++ ++ ++ ++ +HR GRT RAGR G ++ ++ Q
Sbjct: 362 RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ 406
>gnl|CDD|35563 KOG0342, KOG0342, KOG0342, ATP-dependent RNA helicase pitchoune
[RNA processing and modification].
Length = 543
Score = 225 bits (575), Expect = 2e-59
Identities = 119/341 (34%), Positives = 186/341 (54%), Gaps = 8/341 (2%)
Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
A+ E G+ +T VQ+ + P L KDVL +A+TG+GKT+AF L L +F P +
Sbjct: 96 AIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLR--KLKFKPRN 153
Query: 74 APLALAIAPTRELAVQVGREL-EWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
L I PTRELA+Q+ E E L + V + IGG + E L G +I++ TP
Sbjct: 154 GTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATP 213
Query: 133 GRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISP 191
GRL DH+ G +LK +VLDEAD +LD+GF +D+E I+ PK+R+ L+FSAT
Sbjct: 214 GRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPS 273
Query: 192 AITTLAKN-YQKDAVRVNIASEN--RQHSDIDYRAVLVALSDRDNAIVNILRYH-GAKNA 247
+ LA+ ++D V VN+ H ++ V+ R + + L+ +
Sbjct: 274 KVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKI 333
Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
IVF ST SV ++L V+ + G+ Q +R++ + + + TDVAARG
Sbjct: 334 IVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARG 393
Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
+D+PD++ V+ + S+PE +HR GRT R G++G ++ ++
Sbjct: 394 LDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLL 434
>gnl|CDD|35549 KOG0328, KOG0328, KOG0328, Predicted ATP-dependent RNA helicase
FAL1, involved in rRNA maturation, DEAD-box superfamily
[Translation, ribosomal structure and biogenesis].
Length = 400
Score = 222 bits (568), Expect = 2e-58
Identities = 111/346 (32%), Positives = 190/346 (54%), Gaps = 16/346 (4%)
Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLA-LASTLLAENDRFSPA 72
+ G+ +++Q+ + L+ +DV+ AQ+G+GKT F ++ L S ++ +
Sbjct: 41 GIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRET---- 96
Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
AL ++PTRELAVQ+ + + L V CIGG ++ + + L G H+V GTP
Sbjct: 97 ---QALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTP 153
Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
GR+ D I+ + L +K +VLDEADEML+ GF++ I I P ++++ SAT+
Sbjct: 154 GRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHE 213
Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN----AIVNILRYHGAKNAI 248
I + + + D VR+ + + I V V +++ + ++ A+
Sbjct: 214 ILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAV---EKEEWKFDTLCDLYDTLTITQAV 270
Query: 249 VFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGI 308
+FC+T+ V T+ + E F V ++ G++ Q+ER + R G++RV I TDV ARGI
Sbjct: 271 IFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGI 330
Query: 309 DLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
D+ + LVI+ +L +N E +HR GR+GR GRKG+++ FV +++
Sbjct: 331 DVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLR 376
>gnl|CDD|35566 KOG0345, KOG0345, KOG0345, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 567
Score = 221 bits (564), Expect = 5e-58
Identities = 122/349 (34%), Positives = 197/349 (56%), Gaps = 10/349 (2%)
Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
+ EAL E G+ +T VQ A + L+ KDV+V A TGSGKT+AF L + + +
Sbjct: 17 LLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP 76
Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC-IGGVSVHRE-RRDLQNGAHIV 128
P AL I+PTRELA Q+ + + +GG SV + + + G +I+
Sbjct: 77 PGQV-GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNIL 135
Query: 129 VGTPGRLCDHIR--GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFS 186
VGTPGRL D ++ + L+ L+ +VLDEAD +LD+GF + IL PK+RR +FS
Sbjct: 136 VGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFS 195
Query: 187 ATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNILRYHGA 244
AT + + LA+ ++ VRV++ +++ S + ++ ++ + +V++L +
Sbjct: 196 ATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKD 255
Query: 245 KNAIVFCSTRASVSRFTKVLAEHL--FQVVALSGELSQQERSNALQMMRDGRARVCIATD 302
K IVF T ASV F K+ + L ++ ++ G++SQ+ R+ L+ R V TD
Sbjct: 256 KKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315
Query: 303 VAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQ 350
VAARG+D+P ++LV+ + +P + +HR GRT RAGR+G + VF+ P+
Sbjct: 316 VAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPR 364
>gnl|CDD|35561 KOG0340, KOG0340, KOG0340, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 442
Score = 208 bits (530), Expect = 4e-54
Identities = 120/351 (34%), Positives = 185/351 (52%), Gaps = 23/351 (6%)
Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
E L G T +Q+A + L +D + A+TGSGKT AF L + + L D +
Sbjct: 20 EQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRL--SEDPYGI- 76
Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
AL + PTRELA+Q+ + L + V+V +GG + + L + H+VV TP
Sbjct: 77 ---FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATP 133
Query: 133 GRLCDHIRGKGLNIS----HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT 188
GRL DH+ S LK +VLDEAD +L F D +E I + PK R+ L+FSAT
Sbjct: 134 GRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSAT 193
Query: 189 ISPAITTLAKNYQKDAVRVNIASENRQHSDI------DYRAVLVALSDRDNAIVNILR-- 240
I+ I L + +IA E + +LV++ +D +V++LR
Sbjct: 194 ITDTIKQL----FGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDF 249
Query: 241 -YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
+ ++F +T + L +VV+L ++ Q+ER AL R AR+ I
Sbjct: 250 ENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILI 309
Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQ 350
ATDVA+RG+D+P +ELV++ ++ +P++ +HR GRT RAGRKGM++ ++ Q
Sbjct: 310 ATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQ 360
>gnl|CDD|35554 KOG0333, KOG0333, KOG0333, U5 snRNP-like RNA helicase subunit [RNA
processing and modification].
Length = 673
Score = 206 bits (525), Expect = 1e-53
Identities = 121/375 (32%), Positives = 194/375 (51%), Gaps = 29/375 (7%)
Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL---ASTL 62
P + + + GY T +Q + L+ +D + A+TGSGKT AF + L S+L
Sbjct: 251 GFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSL 310
Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
+ P A+ +APTRELA Q+ E G+ IGG+S + L
Sbjct: 311 PPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLS 370
Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSP----- 177
G IV+ TPGRL D + + L ++ VVLDEAD M+D+GF D++ IL+ P
Sbjct: 371 MGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAK 430
Query: 178 --------------------KKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHS 217
K R+ +MF+AT+ PA+ LA++Y + V V I S +
Sbjct: 431 PDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTP 490
Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGE 277
++ + +V+ ++ ++ IL + I+F +T+ K+L + ++V L G
Sbjct: 491 RVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGG 550
Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGR 337
SQ++R NAL R+G + +ATDVA RGID+P++ LVI+ +++ + E+ HR GRTGR
Sbjct: 551 KSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGR 610
Query: 338 AGRKGMSV-FVIPQN 351
AG+ G ++ F+ P +
Sbjct: 611 AGKSGTAISFLTPAD 625
>gnl|CDD|35548 KOG0327, KOG0327, KOG0327, Translation initiation factor 4F,
helicase subunit (eIF-4A) and related helicases
[Translation, ribosomal structure and biogenesis].
Length = 397
Score = 201 bits (512), Expect = 4e-52
Identities = 115/350 (32%), Positives = 189/350 (54%), Gaps = 9/350 (2%)
Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
+++Q+ + P ++ DV+ AQ+G+GKT AF +++ + AL +APT
Sbjct: 50 SAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK------ETQALILAPT 103
Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRE-RRDLQNGAHIVVGTPGRLCDHIRGK 142
RELA Q+ + + L V V CIGG +V RE + L++ HIVVGTPGR+ D +
Sbjct: 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG 163
Query: 143 GLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQK 202
L+ +K VLDEADEML GF+D I I P ++++ SAT+ + + K + +
Sbjct: 164 SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMR 223
Query: 203 DAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTK 262
+ VR+ + + I + V ++ + + ++ Y A++FC+TR V T
Sbjct: 224 EPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDL--YRRVTQAVIFCNTRRKVDNLTD 281
Query: 263 VLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELS 322
L H F V A+ G++ Q ER ++ R G +RV I TD+ ARGID+ + LV++ +L
Sbjct: 282 KLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLP 341
Query: 323 SNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREANVSVVWEPA 372
+ EN +HR GR GR GRKG+++ + + R + + + N + P+
Sbjct: 342 ARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPS 391
>gnl|CDD|35559 KOG0338, KOG0338, KOG0338, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 691
Score = 200 bits (510), Expect = 9e-52
Identities = 113/346 (32%), Positives = 176/346 (50%), Gaps = 11/346 (3%)
Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
N+ + + +A S GY T +Q A + L KD+ A TGSGKT AF L + LL
Sbjct: 187 NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLL-- 244
Query: 66 NDRFSPASAPLA--LAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQN 123
+ P L + PTRELA+QV + L T + V + +GG+ + + L++
Sbjct: 245 ---YRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS 301
Query: 124 GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
IV+ TPGRL DH+R N+ ++ +VLDEAD ML+ GF D++ I+ PK R+
Sbjct: 302 RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQT 361
Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---DRDNAIVNIL 239
++FSAT++ + LA VR+ + + + + DR+ + +++
Sbjct: 362 MLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLI 421
Query: 240 RYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCI 299
IVF T+ R +L + L G L+Q++R +L+ + V I
Sbjct: 422 TRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLI 481
Query: 300 ATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
ATDVA+RG+D+ ++ VI+ + E+ LHR GRT RAGR G SV
Sbjct: 482 ATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV 527
>gnl|CDD|35556 KOG0335, KOG0335, KOG0335, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 482
Score = 200 bits (509), Expect = 1e-51
Identities = 112/377 (29%), Positives = 187/377 (49%), Gaps = 19/377 (5%)
Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
+ + + + GY T VQ+ + +D++ AQTGSGKT AF + + S LL
Sbjct: 78 EAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLL 137
Query: 64 AENDRFSPASA----PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERR 119
E S P AL +APTREL Q+ E +G+ V GG + + R
Sbjct: 138 DEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLR 197
Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLD-LGFRDDIEFILDSSPK 178
++ G I+V TPGRL D I +++ + K +VLDEAD MLD +GF I I++
Sbjct: 198 FIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGM 257
Query: 179 ----KRRMLMFSATISPAITTLAKNYQKDA-VRVNIASENRQHSDIDYRAVLVALSDRDN 233
R+ L+FSAT I LA ++ KD + + + +I + + V ++ +
Sbjct: 258 PPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRS 317
Query: 234 AIVNILRYHGA---------KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERS 284
++++L + +VF T+ L+ + + ++ G+ +Q ER
Sbjct: 318 KLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIERE 377
Query: 285 NALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS 344
AL R+G+A V +AT+VAARG+D+P+++ VI+ ++ ++ ++ +HR GRTGR G G +
Sbjct: 378 QALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRA 437
Query: 345 VFVIPQNMQRRAERLFR 361
+ Q A+ L
Sbjct: 438 TSFFNEKNQNIAKALVE 454
>gnl|CDD|28928 cd00268, DEADc, DEAD-box helicases. A diverse family of proteins
involved in ATP-dependent RNA unwinding, needed in a
variety of cellular processes including splicing,
ribosome biogenesis and RNA degradation. The name
derives from the sequence of the Walker B motif (motif
II). This domain contains the ATP- binding region..
Length = 203
Score = 200 bits (510), Expect = 1e-51
Identities = 79/203 (38%), Positives = 112/203 (55%), Gaps = 4/203 (1%)
Query: 6 NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAE 65
+ + + G+ T +Q + P L +DV+ AQTGSGKT AF + + L
Sbjct: 5 GLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPS 64
Query: 66 NDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA 125
P AL +APTRELA+Q+ L T + V V GG S+ ++ R L+ G
Sbjct: 65 ----PKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGP 120
Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
HIVV TPGRL D + L++S +K +VLDEAD MLD+GF D I IL PK R+ L+F
Sbjct: 121 HIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLF 180
Query: 186 SATISPAITTLAKNYQKDAVRVN 208
SAT+ + LA+ + ++ VR+
Sbjct: 181 SATMPKEVRDLARKFLRNPVRIL 203
>gnl|CDD|35562 KOG0341, KOG0341, KOG0341, DEAD-box protein abstrakt [RNA
processing and modification].
Length = 610
Score = 192 bits (490), Expect = 2e-49
Identities = 116/354 (32%), Positives = 181/354 (51%), Gaps = 13/354 (3%)
Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
P+ + L ++G V+ T +Q L L +D++ A TGSGKT+ F L + L +
Sbjct: 178 PKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM 237
Query: 68 R--FSPASAPLALAIAPTRELAVQVGRELEWLYAKTG------VVVAVCIGGVSVHRERR 119
F+ P L I P+RELA Q +E A + +CIGGV V +
Sbjct: 238 MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLD 297
Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKK 179
++ G HIVV TPGRL D + K +++ + + LDEAD M+D+GF DDI I +
Sbjct: 298 VVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQ 357
Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNIL 239
R+ L+FSAT+ I AK+ V VN+ D+ V ++ IV +L
Sbjct: 358 RQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK---QEAKIVYLL 414
Query: 240 R--YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
+ ++F +A V + L + VA+ G Q++R A++ R G+ V
Sbjct: 415 ECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDV 474
Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQN 351
+ATDVA++G+D PD++ VI+ ++ EN +HR GRTGR+G+ G++ I +N
Sbjct: 475 LVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528
>gnl|CDD|35569 KOG0348, KOG0348, KOG0348, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 708
Score = 190 bits (484), Expect = 9e-49
Identities = 124/401 (30%), Positives = 190/401 (47%), Gaps = 73/401 (18%)
Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
TSVQ+ + L +D LV AQTGSGKT+A+ L + +L A + + P AL I P
Sbjct: 160 PTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVP 219
Query: 83 TRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRG 141
TRELA+Q+ ++ L +V V +GG E+ L+ G +I++GTPGRL DH++
Sbjct: 220 TRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKN 279
Query: 142 -KGLNISHLKAVVLDEADEMLDLGFRDDIEFIL-------------DSSPKKRRMLMFSA 187
K + S L+ +VLDEAD +L+LGF DI IL P + + ++ SA
Sbjct: 280 TKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSA 339
Query: 188 TISPAITTLAKNYQKDAVRVNI-ASENRQHSDIDY------------------------- 221
T++ + LA KD V +++ S ++ +
Sbjct: 340 TLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQR 399
Query: 222 ------RAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV----SRFTKVLAEHLFQ- 270
+ LVAL+ ++N +++ + IVF S SV S F++ L HL
Sbjct: 400 YTVVPPKLRLVALA---ALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGS 456
Query: 271 -----------------VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
L G + Q+ER++ Q R V + TDVAARG+DLP +
Sbjct: 457 SGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHV 516
Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNMQ 353
LV+ + + + LHR GRT RAG KG ++ F++P +
Sbjct: 517 GLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAE 557
>gnl|CDD|35564 KOG0343, KOG0343, KOG0343, RNA Helicase [RNA processing and
modification].
Length = 758
Score = 190 bits (483), Expect = 1e-48
Identities = 121/365 (33%), Positives = 194/365 (53%), Gaps = 13/365 (3%)
Query: 4 FENIP--QVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAST 61
F ++P Q + L E +V +T +Q + L+ DVL +A+TGSGKT+AF + +
Sbjct: 71 FADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
L ++SP AL I+PTRELA+Q L + + IGG V E +
Sbjct: 131 LYRL--KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI 188
Query: 122 QNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
+ +I+V TPGRL H+ + S+L+ +VLDEAD MLD+GF+ + I+++ PKKR
Sbjct: 189 -SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKR 247
Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH--SDIDYRAVLVALSDRDNAIVNI 238
+ L+FSAT + ++ LA+ KD V V++ S++ V+V L D+ + + +
Sbjct: 248 QTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSF 307
Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHL---FQVVALSGELSQQERSNALQMMRDGRA 295
++ H K +IVF S+ V +F L ++AL G +SQ++R + RA
Sbjct: 308 IKSHLKKKSIVFLSSCKQV-KFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA 366
Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMS-VFVIPQNMQR 354
V TDVAARG+D P ++ VI + + + +HR GRT R +G S + + P +
Sbjct: 367 VVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426
Query: 355 RAERL 359
++L
Sbjct: 427 MLKKL 431
>gnl|CDD|35560 KOG0339, KOG0339, KOG0339, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 731
Score = 187 bits (477), Expect = 5e-48
Identities = 113/352 (32%), Positives = 176/352 (50%), Gaps = 5/352 (1%)
Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
A+ + Y T +Q L L +DV+ A+TGSGKT AF + ++ + + P
Sbjct: 236 TAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPE-LKPG 294
Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTP 132
P+ + + PTRELA Q+ E + G+ V GG S + ++L+ GA IVV TP
Sbjct: 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATP 354
Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA 192
GRL D ++ K N+S + +VLDEAD M D+GF + I R+ L+FSAT
Sbjct: 355 GRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKK 414
Query: 193 ITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDN---AIVNILRYHGAKNAIV 249
I LA++ D VRV + DI + V V S+ + +++ + ++
Sbjct: 415 IEKLARDILSDPVRVVQGEVGEANEDIT-QTVSVCPSEEKKLNWLLRHLVEFSSEGKVLI 473
Query: 250 FCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGID 309
F + +A L F V L G+ Q ER+ L + R V +ATDVAARG+D
Sbjct: 474 FVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLD 533
Query: 310 LPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
+P ++ V++ + + + + HR GRTGRAG KG++ ++ + A L
Sbjct: 534 IPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVN 585
>gnl|CDD|35568 KOG0347, KOG0347, KOG0347, RNA helicase [RNA processing and
modification].
Length = 731
Score = 187 bits (477), Expect = 6e-48
Identities = 125/419 (29%), Positives = 209/419 (49%), Gaps = 46/419 (10%)
Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAE 65
+P I ALS G+ T +Q +L +R K D+L +A+TGSGKT+AFG+ + LL
Sbjct: 188 LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLES 247
Query: 66 NDRFSPASA-------PLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER 118
+D S P+AL + PTRELA QV + L+ + KT + VA GG++V +++
Sbjct: 248 SDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQ 307
Query: 119 RDLQNGAHIVVGTPGRLCDHIRGKGL---NISHLKAVVLDEADEMLDLG----FRDDIEF 171
R L IVV TPGRL + I N +K +VLDEAD M++ G ++
Sbjct: 308 RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKH 367
Query: 172 ILDSSPK-KRRMLMFSATISPAITT-LAKNYQKDAVR----------------------V 207
+ + +R+ L+FSAT++ + L+ + +K +
Sbjct: 368 LNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKII 427
Query: 208 NIASENRQHSDIDYRAVLVALSDRDNAIVNIL-RYHGAKNAIVFCSTRASVSRFTKVLAE 266
++ ++ S + + ++D + L RY G +VFC++ V R T +L
Sbjct: 428 DLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPG--RTLVFCNSIDCVKRLTVLLNN 485
Query: 267 HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPE 326
+ L + Q++R L+ + + V IATDVAARG+D+P ++ VIH ++ E
Sbjct: 486 LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSE 545
Query: 327 NLLHRSGRTGRAGRKGMSVFVI-PQNMQ---RRAERLFREANVSVVWEPAPSVEAIRER 381
+HRSGRT RA +G+SV + PQ + + + L ++ ++ + ++A++ER
Sbjct: 546 IYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKER 604
>gnl|CDD|35555 KOG0334, KOG0334, KOG0334, RNA helicase [RNA processing and
modification].
Length = 997
Score = 185 bits (471), Expect = 3e-47
Identities = 109/358 (30%), Positives = 184/358 (51%), Gaps = 10/358 (2%)
Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFS 70
I E L + GY T +Q + + +DV+ A+TGSGKT+AF L + + +
Sbjct: 376 ILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR-PLE 434
Query: 71 PASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVG 130
P+AL +APTRELA+Q+ RE+ G+ V GG + ++ +L+ GA IVV
Sbjct: 435 EGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVC 494
Query: 131 TPGRLCDHI---RGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
TPGR+ D + G+ N+ + +VLDEAD M D+GF I IL + R+ ++FSA
Sbjct: 495 TPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSA 554
Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR----YHG 243
T ++ LA+ K V + + + ++ + A + + +L +
Sbjct: 555 TFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCA--IENEKFLKLLELLGERYE 612
Query: 244 AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDV 303
I+F + + L + + +L G + Q +RS+ ++ ++G + +AT V
Sbjct: 613 DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV 672
Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFR 361
ARG+D+ +L LV++ + ++ E+ +HR GRTGRAGRKG +V I + + A L +
Sbjct: 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCK 730
>gnl|CDD|35557 KOG0336, KOG0336, KOG0336, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 629
Score = 185 bits (470), Expect = 3e-47
Identities = 117/370 (31%), Positives = 188/370 (50%), Gaps = 9/370 (2%)
Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
F+ P+V+ + + G+ T +Q L+ D++ AQTG+GKT+AF L +
Sbjct: 225 FQCYPEVMEN-IKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHID 283
Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCI-GGVSVHRERRDLQ 122
A+ R + P L + PTRELA+Q+ E++ Y+ G+ +VC+ GG + + + DL+
Sbjct: 284 AQPKRREQRNGPGVLVLTPTRELALQIEGEVK-KYSYNGLK-SVCVYGGGNRNEQIEDLK 341
Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRM 182
G I++ TPGRL D +N++ + +VLDEAD MLD+GF I IL R+
Sbjct: 342 RGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQT 401
Query: 183 LMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH 242
+M SAT + LA++Y K+ + V + S + + ++V IV +
Sbjct: 402 VMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVAN 461
Query: 243 GAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
+ N I+F S + + +L G Q +R AL+ + G R+ +A
Sbjct: 462 MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVA 521
Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
TD+A+RG+D+PD+ V + + N E +HR GRTGRAGR G S+ + +N AE L
Sbjct: 522 TDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELI 581
Query: 361 R---EANVSV 367
+ A V
Sbjct: 582 QILERAEQEV 591
>gnl|CDD|144015 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 167
Score = 180 bits (458), Expect = 1e-45
Identities = 79/173 (45%), Positives = 101/173 (58%), Gaps = 6/173 (3%)
Query: 24 TSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPT 83
T +Q + L KDVLV A TGSGKT+AF L LL D P AL +APT
Sbjct: 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNPD------GPQALVLAPT 54
Query: 84 RELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKG 143
RELA Q+ EL+ L G+ VA+ GG S + R L+ G I+VGTPGRL D + G
Sbjct: 55 RELAEQIYEELKKLGKYLGLKVALLYGGDSPKEQLRKLKKGPDILVGTPGRLLDLLERGG 114
Query: 144 LNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
L + +LK +VLDEA +LD GF DD+E IL P KR++L+ SAT+ + L
Sbjct: 115 LLLKNLKLLVLDEAHRLLDQGFGDDLEEILRRLPPKRQILLLSATLPRNVEDL 167
>gnl|CDD|39485 KOG4284, KOG4284, KOG4284, DEAD box protein [Transcription].
Length = 980
Score = 174 bits (442), Expect = 6e-44
Identities = 100/348 (28%), Positives = 171/348 (49%), Gaps = 27/348 (7%)
Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA 72
L + T +Q A + + D++V A++G+GKT+ F + +L + +
Sbjct: 38 LGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS------ 91
Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAK-TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
S + + PTRE+AVQ+ + + TG +V IGG + + L IV+GT
Sbjct: 92 SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGT 150
Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLG-FRDDIEFILDSSPKKRRMLMFSATIS 190
PGR+ + +N+SH++ VLDEAD+++D F+DDI I++S P+ R++ FSAT
Sbjct: 151 PGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYP 210
Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNA-------------IVN 237
+ L + +D V +++ Q I + +VA +N+ +
Sbjct: 211 RNLDNLLSKFMRDPALVRFNADDVQLFGI--KQYVVAKCSPNNSVEEMRLKLQKLTHVFK 268
Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
+ Y A+VFC + L V +SG +SQ++R A+ +R R R+
Sbjct: 269 SIPY---VQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRI 325
Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
++TD+ ARGID ++ LV++ + ++ E HR GR GR G G +V
Sbjct: 326 LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAV 373
>gnl|CDD|35553 KOG0332, KOG0332, KOG0332, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 477
Score = 172 bits (437), Expect = 2e-43
Identities = 106/359 (29%), Positives = 183/359 (50%), Gaps = 26/359 (7%)
Query: 2 KIFENI---PQVIGEALSERGYVNLTSVQEAILNPDLRE--KDVLVSAQTGSGKTVAFGL 56
K FE + P+++ + L + + +QE L L E ++++ +Q+G+GKT AF L
Sbjct: 90 KSFEELRLKPELL-KGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVL 148
Query: 57 ALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR 116
+ S + + P + +APTRELA Q G +E + T + + I G R
Sbjct: 149 TMLSRVDPDV------VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR 202
Query: 117 ERRDLQNGAHIVVGTPGRLCDHI-RGKGLNISHLKAVVLDEADEMLDL-GFRDDIEFILD 174
+ IV+GTPG + D + + K +++ +K VLDEAD M+D GF+D I+
Sbjct: 203 GN---KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMR 259
Query: 175 SSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRD-- 232
S P+ +++L+FSAT + A +A + + E D + ++ D
Sbjct: 260 SLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREE-LALDNIKQLYVLCACRDDKY 318
Query: 233 NAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRD 292
A+VN+ +I+FC T+A+ + + QV L G+L+ ++R+ + R+
Sbjct: 319 QALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE 378
Query: 293 GRARVCIATDVAARGIDLPDLELVIHAEL------SSNPENLLHRSGRTGRAGRKGMSV 345
G+ +V I T+V ARGID+ + +V++ +L + E LHR GRTGR G+KG+++
Sbjct: 379 GKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAI 437
>gnl|CDD|35547 KOG0326, KOG0326, KOG0326, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 459
Score = 165 bits (420), Expect = 2e-41
Identities = 91/332 (27%), Positives = 167/332 (50%), Gaps = 7/332 (2%)
Query: 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
E+G+ + +QE + L +D+L A+ G+GKT A+ + + + + +
Sbjct: 102 EKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQ------ 155
Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
A+ + PTRELA+Q + + L G+ V V GG S+ + L H+VVGTPGR+
Sbjct: 156 AIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRIL 215
Query: 137 DHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTL 196
D + ++S +V+DEAD++L + F+ +E ++ PK+R++L++SAT +
Sbjct: 216 DLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGF 275
Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRAS 256
+ K +N+ E Y A V + + + + +I+FC++
Sbjct: 276 MDRHLKKPYEINLMEELTLKGVTQYYA-FVEERQKVHCLNTLFSKLQINQSIIFCNSTNR 334
Query: 257 VSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELV 316
V K + E + + +++Q+ R+ R+G+ R + TD+ RGID+ + +V
Sbjct: 335 VELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394
Query: 317 IHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
I+ + N E LHR GR+GR G G+++ +I
Sbjct: 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLI 426
>gnl|CDD|35571 KOG0350, KOG0350, KOG0350, DEAD-box ATP-dependent RNA helicase [RNA
processing and modification].
Length = 620
Score = 161 bits (409), Expect = 4e-40
Identities = 108/411 (26%), Positives = 184/411 (44%), Gaps = 62/411 (15%)
Query: 11 IGEALSERGYVNLTSVQEAILN---------PDLREKDVLVSAQTGSGKTVAFGLALAST 61
I + L + L VQ A+L P R +D+ V+A TGSGKT+A+ + +
Sbjct: 148 IDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207
Query: 62 LLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDL 121
L + P A+ I PTRELA+QV + L + TG+ V G S+ E R L
Sbjct: 208 LSSR-----PVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQL 262
Query: 122 QN-----GAHIVVGTPGRLCDHIRG-KGLNISHLKAVVLDEADEMLDLGFRD-------- 167
+ I+V TPGRL DH+ K ++ HL+ +V+DEAD +LD F++
Sbjct: 263 ASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSL 322
Query: 168 --------------------------DIEFILDSSPKKRRMLMFSATISPAITTLAK--- 198
++ L L+FSAT+S + L
Sbjct: 323 CKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL 382
Query: 199 -NYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASV 257
+ V + S + +R V+ + A+ ++ + + F ++ +S
Sbjct: 383 HIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSA 442
Query: 258 SRFTKVLAEHL----FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDL 313
+R VL F+V +G+L+ + R L+ G V I +D ARGID+ D+
Sbjct: 443 NRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502
Query: 314 ELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLFREAN 364
+ VI+ + ++ + +HR+GRT RAG+ G ++ ++ ++ +R +L ++ N
Sbjct: 503 DNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553
>gnl|CDD|35567 KOG0346, KOG0346, KOG0346, RNA helicase [RNA processing and
modification].
Length = 569
Score = 141 bits (357), Expect = 4e-34
Identities = 95/394 (24%), Positives = 166/394 (42%), Gaps = 43/394 (10%)
Query: 2 KIFE--NIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALA 59
K FE + + +A+++ G+ T +Q + + L KDV+ A+TGSGKT A+ + L
Sbjct: 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLL 78
Query: 60 STLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVC--IGGVSVHRE 117
LLAE P A+ + PT+ELA QV + +E L + +S
Sbjct: 79 QKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVN 138
Query: 118 RRDLQNGAHIVVGTPGRLCDHIR-GKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSS 176
L + IVV TP +L H+ G + L +V+DEAD +L G+ +D++ +
Sbjct: 139 SVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHL 198
Query: 177 PKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD-IDYRAVLVALSDRDNAI 235
P+ + + SAT+S + L K + + V + + + D + V + D+ +
Sbjct: 199 PRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258
Query: 236 VNILRYHGAK-NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGR 294
+L+ + +++F +T R L + + L+ EL R + ++ G
Sbjct: 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL 318
Query: 295 ARVCIATDV-----------------------------------AARGIDLPDLELVIHA 319
+ IATD +RGID + V++
Sbjct: 319 YDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNF 378
Query: 320 ELSSNPENLLHRSGRTGRAGRKGMSV-FVIPQNM 352
+ + +HR GRT R KG ++ FV P+
Sbjct: 379 DFPETVTSYIHRVGRTARGNNKGTALSFVSPKEE 412
>gnl|CDD|35558 KOG0337, KOG0337, KOG0337, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 529
Score = 141 bits (357), Expect = 5e-34
Identities = 99/330 (30%), Positives = 170/330 (51%), Gaps = 6/330 (1%)
Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
A+ ++G+ T +Q + L +DV+ A+TGSGKT AF + + L + + +
Sbjct: 35 AIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQ-----T 89
Query: 74 APLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPG 133
AL ++PTRELA+Q + ++ L T + ++ +GG S+ + L I++ TPG
Sbjct: 90 GLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPG 149
Query: 134 RLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAI 193
RL L +S ++ VV DEAD + ++GF++ + IL P+ R+ L+FSAT+ +
Sbjct: 150 RLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDL 209
Query: 194 TTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYH-GAKNAIVFCS 252
AK V V + E + + R V ++++ A+++IL K IVF +
Sbjct: 210 VDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVA 269
Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
T+ V +L + + + L Q+ R + R + + + TDVAARG+D+P
Sbjct: 270 TKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPL 329
Query: 313 LELVIHAELSSNPENLLHRSGRTGRAGRKG 342
L+ VI+ + + + +HR GR RAGR G
Sbjct: 330 LDNVINYDFPPDDKLFVHRVGRVARAGRTG 359
>gnl|CDD|35550 KOG0329, KOG0329, KOG0329, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 387
Score = 132 bits (334), Expect = 2e-31
Identities = 92/335 (27%), Positives = 158/335 (47%), Gaps = 44/335 (13%)
Query: 14 ALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPAS 73
A+ + G+ + + VQ + + DVL A++G GKT F LA + + + S
Sbjct: 56 AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVS--- 112
Query: 74 APLALAIAPTRELAVQVGRELEWLYAK--TGVVVAVCIGGVSVHRERRDLQNGAHIVVGT 131
L + TRELA Q+ +E E ++K V V+V GG+ + ++ L+N HIVVGT
Sbjct: 113 ---VLVMCHTRELAFQISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGT 168
Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEML-DLGFRDDIEFILDSSPKKRRMLMFSATIS 190
PGR+ +R + LN+ ++K VLDE D+ML L R D++ I +P +++++MFSAT+S
Sbjct: 169 PGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 228
Query: 191 PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNAIVF 250
I + + +D + + + E + L HG + V
Sbjct: 229 KEIRPVCHKFMQDPMEIFVDDEAK------------------------LTLHGLQQYYVK 264
Query: 251 CSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDL 310
+ +L F V + + Q R + +ATD+ RG+D+
Sbjct: 265 LKENEKNRKLNDLLDVLEFNQVVIFVKSVQ----------RLSFQKRLVATDLFGRGMDI 314
Query: 311 PDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
+ +V + ++ + + LHR R GR G KG+++
Sbjct: 315 ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 349
>gnl|CDD|35565 KOG0344, KOG0344, KOG0344, ATP-dependent RNA helicase [RNA
processing and modification].
Length = 593
Score = 120 bits (303), Expect = 8e-28
Identities = 97/350 (27%), Positives = 165/350 (47%), Gaps = 17/350 (4%)
Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
+++ L E G+ T +Q+ + L ++DVL A TGSGKT+AF L + L +
Sbjct: 145 KRLLEN-LQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ 203
Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVV-AVCIGGVSVHRERRDLQNGAH 126
AL ++PTRELA Q+ RE+ G + A + ++ +
Sbjct: 204 EKHK-VGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEK 262
Query: 127 --IVVGTPGRLCDHIRGKGLNI--SHLKAVVLDEADEMLD-LGFRDDIEFILD--SSPKK 179
I++ TP R+ + LNI S ++ +V+DEAD + + F + + I SP
Sbjct: 263 YDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDI 322
Query: 180 RRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSD-RDNAIVNI 238
R +FSATIS + A+ + D RV + N + +D V + A+ +
Sbjct: 323 RVA-LFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQL 381
Query: 239 LRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALS---GELSQQERSNALQMMRDGRA 295
+ ++F ++ + + L ++ + + GE SQ++R ++ R G+
Sbjct: 382 VASGFKPPVLIFVQSKERAKQLFEELE--IYDNINVDVIHGERSQKQRDETMERFRIGKI 439
Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSV 345
V I TD+ ARGID + LVI+ + + + +HR GRTGRAGR G ++
Sbjct: 440 WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAI 489
>gnl|CDD|28927 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region..
Length = 144
Score = 119 bits (300), Expect = 2e-27
Identities = 60/152 (39%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 38 KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWL 97
+DVL++A TGSGKT+A L + L + L +APTRELA QV L+ L
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKG-------GQVLVLAPTRELANQVAERLKEL 53
Query: 98 YAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEA 157
G+ V IGG S+ ++ + L IVVGTPGRL D + L++ L ++LDEA
Sbjct: 54 -FGEGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEA 112
Query: 158 DEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
+L+ GF IL PK R++L+ SAT
Sbjct: 113 HRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144
>gnl|CDD|35570 KOG0349, KOG0349, KOG0349, Putative DEAD-box RNA helicase DDX1 [RNA
processing and modification].
Length = 725
Score = 118 bits (296), Expect = 5e-27
Identities = 88/337 (26%), Positives = 146/337 (43%), Gaps = 53/337 (15%)
Query: 64 AENDRFSPASAPLALAIAPTRELAVQV---GRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
A + + +P +AP A+ + P+RELA Q E + + V + IGGV + +
Sbjct: 277 APSAKPAP-NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQ 335
Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPK-- 178
L++G HIVVGTPGRL I + ++H + +VLDEAD +L G+ D I P
Sbjct: 336 LKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMT 395
Query: 179 ----KRRMLMFSATISP-AITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALS---- 229
+ + + SAT+ + + + V++ E+ + + LV S
Sbjct: 396 SDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGS 455
Query: 230 --------------DRDNAI---------------------VNILRYHGAKNAIVFCSTR 254
+DN + V +R H AI+FC T+
Sbjct: 456 WCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTK 515
Query: 255 ASVSRFTKVLAE---HLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
+++ + + V L G+ ER L+ + + I TDVAARG+D+
Sbjct: 516 QDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDIT 575
Query: 312 DLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
L +I+ L + N +HR GR GRA R G+++ ++
Sbjct: 576 GLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLV 612
Score = 33.5 bits (76), Expect = 0.15
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 11 IGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLAL 58
+G A E + T VQ + L DVL++A+TGSGKT AF L +
Sbjct: 13 LGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 60
>gnl|CDD|31394 COG1201, Lhr, Lhr-like helicases [General function prediction
only].
Length = 814
Score = 111 bits (278), Expect = 6e-25
Identities = 82/370 (22%), Positives = 155/370 (41%), Gaps = 29/370 (7%)
Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
+IF + + E + + +LT Q + ++VL+ A TGSGKT A L + +
Sbjct: 2 EEIFNILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVIN 60
Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
LL + AL I+P + L + R LE + G+ VAV G +++
Sbjct: 61 ELL-SLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKM 119
Query: 121 LQNGAHIVVGTPGRLCDHIRGKGL--NISHLKAVVLDEADEM--------LDLGFRDDIE 170
L+N HI++ TP L + + ++ V++DE + L L +E
Sbjct: 120 LKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALS----LE 175
Query: 171 FILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASEN-RQHSDIDYRAVLVALS 229
+ + + +R+ + SAT+ P +AK I + + +I + + L
Sbjct: 176 RLRELAGDFQRIGL-SATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLI 233
Query: 230 D-------RDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL-SGELSQQ 281
I +++ H + ++F +TR+ R L + ++ + G LS++
Sbjct: 234 YDEELWAALYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRE 291
Query: 282 ERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
R + +++G + +AT GID+ D++LVI + L R GR G +
Sbjct: 292 LRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGE 351
Query: 342 GMSVFVIPQN 351
+I ++
Sbjct: 352 VSKGIIIAED 361
>gnl|CDD|28960 cd00079, HELICc, Helicase superfamily c-terminal domain; associated
with DEXDc-, DEAD-, and DEAH-box proteins, yeast
initiation factor 4A, Ski2p, and Hepatitis C virus NS3
helicases; this domain is found in a wide variety of
helicases and helicase related proteins; may not be an
autonomously folding unit, but an integral part of the
helicase; 4 helicase superfamilies at present according
to the organization of their signature motifs; all
helicases share the ability to unwind nucleic acid
duplexes with a distinct directional polarity; they
utilize the free energy from nucleoside triphosphate
hydrolysis to fuel their translocation along DNA,
unwinding the duplex in the process.
Length = 131
Score = 104 bits (261), Expect = 7e-23
Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Query: 218 DIDYRAVLVALSDRDNAIVNILRYHGAKN--AIVFCSTRASVSRFTKVLAEHLFQVVALS 275
I VL ++ A++ +L+ H K ++FC ++ + ++L + +V AL
Sbjct: 1 PIKQY-VLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALH 59
Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRT 335
G+ SQ+ER L+ R+G V +ATDV ARGIDLP++ +VI+ +L +P + L R GR
Sbjct: 60 GDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRA 119
Query: 336 GRAGRKGMSVFV 347
GRAG+KG ++ +
Sbjct: 120 GRAGQKGTAILL 131
>gnl|CDD|144016 pfam00271, Helicase_C, Helicase conserved C-terminal domain. The
Prosite family is restricted to DEAD/H helicases,
whereas this domain family is found in a wide variety of
helicases and helicase related proteins. It may be that
this is not an autonomously folding unit, but an
integral part of the helicase.
Length = 78
Score = 86.8 bits (216), Expect = 1e-17
Identities = 38/78 (48%), Positives = 54/78 (69%)
Query: 262 KVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
K+L + +V L G LSQ+ER L+ R+G+++V +ATDVA RGIDLPD+ +VI+ +L
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNVVINYDL 60
Query: 322 SSNPENLLHRSGRTGRAG 339
NP + + R GR GRAG
Sbjct: 61 PWNPASYIQRIGRAGRAG 78
>gnl|CDD|30860 COG0514, RecQ, Superfamily II DNA helicase [DNA replication,
recombination, and repair].
Length = 590
Score = 79.6 bits (196), Expect = 2e-15
Identities = 78/334 (23%), Positives = 131/334 (39%), Gaps = 31/334 (9%)
Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
GY + Q+ I++ L KD LV TG GK++ + + LL E L L
Sbjct: 14 GYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIP---ALLLEG---------LTL 61
Query: 79 AIAPTREL-AVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAH-----IVVGTP 132
++P L QV + G+ A + ER+ + N ++ +P
Sbjct: 62 VVSPLISLMKDQVDQLEA-----AGIRAA-YLNSTLSREERQQVLNQLKSGQLKLLYISP 115
Query: 133 GRLCDHIRGKGLNISHLKAVVLDEADEMLDLG--FRDDIEFILDSSPKKRR--MLMFSAT 188
RL + L + V +DEA + G FR D + +L +AT
Sbjct: 116 ERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTAT 175
Query: 189 ISPAIT-TLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKNA 247
+P + + + + S +R ++ + V A + + +K+
Sbjct: 176 ATPRVRDDIREQLGLQDANIFRGSFDR--PNLALKVVEKGEPSDQLAFLATVLPQLSKSG 233
Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
I++C TR V + L ++ A LS +ER Q + +V +AT+ G
Sbjct: 234 IIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMG 293
Query: 308 IDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
ID PD+ VIH +L + E+ +GR GR G
Sbjct: 294 IDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327
>gnl|CDD|31398 COG1205, COG1205, Distinct helicase family with a unique C-terminal
domain including a metal-binding cysteine cluster
[General function prediction only].
Length = 851
Score = 75.8 bits (186), Expect = 3e-14
Identities = 83/378 (21%), Positives = 134/378 (35%), Gaps = 48/378 (12%)
Query: 7 IPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEN 66
+ + AL + G L S Q L ++V+V+ TGSGKT +F L + LL +
Sbjct: 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP 114
Query: 67 DRFSPASAPLALAIAPTRELAV-QVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ-NG 124
AL + PT LA Q R E + G V G + ERR + N
Sbjct: 115 SA-------RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNP 167
Query: 125 AHIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDEA--------DEMLDLGFRDDIEFI 172
I++ P L + + +LK +V+DE E+ L R +
Sbjct: 168 PDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR--LLRR 225
Query: 173 LDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNI------------ASENRQHSDID 220
L +++ SAT++ A+ V + ++
Sbjct: 226 LRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELA 284
Query: 221 YRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVL-------AEHLFQVVA 273
AL++ ++R +G + +VF +R V L V+
Sbjct: 285 ESIRRSALAELATLAALLVR-NGIQT-LVFFRSRKQVELLYLSPRRRLVREGGKLLDAVS 342
Query: 274 L-SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRS 332
L ++ER ++G IAT+ GID+ L+ VI +
Sbjct: 343 TYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQ- 401
Query: 333 GRTGRAGRKGMSVFVIPQ 350
R GRAGR+G V+
Sbjct: 402 -RAGRAGRRGQESLVLVV 418
>gnl|CDD|31261 COG1061, SSL2, DNA or RNA helicases of superfamily II
[Transcription / DNA replication, recombination, and
repair].
Length = 442
Score = 68.6 bits (167), Expect = 5e-12
Identities = 63/369 (17%), Positives = 112/369 (30%), Gaps = 74/369 (20%)
Query: 28 EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELA 87
+A++ E+ ++ TG+GKTV + L L + PT+EL
Sbjct: 46 DALVKNRRTERRGVIVLPTGAGKTV-VAAEAIAELKRS-----------TLVLVPTKELL 93
Query: 88 VQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNIS 147
Q L + + I G A + V T L +
Sbjct: 94 DQWAEAL---KKFLLLNDEIGIYGGGEKELE-----PAKVTVATVQTLARRQLLDEFLGN 145
Query: 148 HLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSAT---------------ISPA 192
++ DE + +R IL+ L +AT I P
Sbjct: 146 EFGLIIFDEVHHLPAPSYRR----ILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPI 201
Query: 193 I-------------------------------TTLAKNYQKDAVRVNIASENRQHSDIDY 221
+ AK + + R ++
Sbjct: 202 VYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEA-- 259
Query: 222 RAVLVALSDRDNAIVNILRYHG-AKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQ 280
R + +A + A+ +L H ++F S K+ V A++GE +
Sbjct: 260 RRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPK 318
Query: 281 QERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
+ER L+ R G +V + V G+D+PD +++I + + + R GR R
Sbjct: 319 EEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAE 378
Query: 341 KGMSVFVIP 349
+
Sbjct: 379 GKEDTLALD 387
>gnl|CDD|146487 pfam03880, DbpA, DbpA RNA binding domain. This RNA binding domain
is found at the C-terminus of a number of DEAD helicase
proteins. It is sufficient to confer specificity for
hairpin 92 of 23S rRNA, which is part of the ribosomal
A-site. However, several members of this family lack
specificity for 23S rRNA. These can proteins can
generally be distinguished by a basic region that
extends beyond this domain [Karl Kossen, unpublished
data].
Length = 74
Score = 65.9 bits (162), Expect = 3e-11
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 467 SWFSLSVGSKQKAEARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVD 519
++VG K ++ + GI IG I + + +FVEV D D
Sbjct: 1 VRLFINVGRKDGIRPGDIVGAIANEGGITGDDIGKIDIFDNFSFVEVPEDMAD 53
>gnl|CDD|35575 KOG0354, KOG0354, KOG0354, DEAD-box like helicase [General function
prediction only].
Length = 746
Score = 66.1 bits (161), Expect = 3e-11
Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 247 AIVFCSTRASVSRFTKVLAE-HLFQVVA--LSGE--------LSQQERSNALQMMRDGRA 295
I+F TR S K L + H + A G+ ++Q+E+ L RDG
Sbjct: 416 TIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEI 475
Query: 296 RVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRR 355
V +AT VA G+D+ + LVI + SSNP ++ R GR GRA R V + +
Sbjct: 476 NVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIE 533
Query: 356 AER 358
ER
Sbjct: 534 FER 536
Score = 31.8 bits (72), Expect = 0.57
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 12/168 (7%)
Query: 23 LTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAP 82
L + QE ++ P L K+ +++ TGSGKT A+ ++ + + P + +AP
Sbjct: 63 LRNYQEELVQPALG-KNTIIALPTGSGKTFI-----AAVIMKNHFEWRPKGK--VVFLAP 114
Query: 83 TRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RG 141
TR L Q V +G R ++ + TP L + + G
Sbjct: 115 TRPLVNQQIACFSIYLIPYSVTGQ--LGDTVPRSNRGEIVASKRVFFRTPQILENDLKSG 172
Query: 142 KGLNISHLKAVVLDEADEML-DLGFRDDIEFILDSSPKKRRMLMFSAT 188
+S +V DE + + + + LD + ++L +A+
Sbjct: 173 LHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTAS 220
>gnl|CDD|31397 COG1204, COG1204, Superfamily II helicase [General function
prediction only].
Length = 766
Score = 65.8 bits (160), Expect = 3e-11
Identities = 78/375 (20%), Positives = 131/375 (34%), Gaps = 70/375 (18%)
Query: 25 SVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTR 84
QEA+ L +++VL+SA TGSGKT+ LA+ STLL + + I P +
Sbjct: 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGK--------VVYIVPLK 86
Query: 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGL 144
LA + E L G+ V + G + ER ++V TP +L R +
Sbjct: 87 ALAEEKYEEFSRLEEL-GIRVGISTGDYDLDDERLA---RYDVIVTTPEKLDSLTRKRPS 142
Query: 145 NISHLKAVVLDEADEMLDLGFRDD-IEFILDSSPKKR---RMLMFSATISPAITTLAK-- 198
I + VV+DE +L R +E I+ + R++ SAT+ P +A
Sbjct: 143 WIEEVDLVVIDEI-HLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL-PNAEEVADWL 200
Query: 199 --NYQKDAVRVNIASE---NRQHSDIDYRAVLVALSDRDNAIVNILRYHGAKN--AIVFC 251
+ R DN + ++ A+ +VF
Sbjct: 201 NAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFV 260
Query: 252 STRASVSRFTKVLAEHLF----------------QVVALSGE------------------ 277
+R + K L + ++
Sbjct: 261 HSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320
Query: 278 ---LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGR 334
L +++R R G+ +V ++T A G++LP ++I +P+ +
Sbjct: 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPV 380
Query: 335 ------TGRAGRKGM 343
GRAGR G
Sbjct: 381 LDVLQMAGRAGRPGY 395
>gnl|CDD|35572 KOG0351, KOG0351, KOG0351, ATP-dependent DNA helicase [Replication,
recombination and repair].
Length = 941
Score = 59.7 bits (144), Expect = 2e-09
Identities = 76/343 (22%), Positives = 122/343 (35%), Gaps = 43/343 (12%)
Query: 19 GYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA--SAPL 76
G+ Q +N L KD V TG GK++ + L PA +
Sbjct: 261 GHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQL--------------PALLLGGV 306
Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRER----RDLQNGA---HIVV 129
+ I+P L L +K G+ A + + ER + L NG I+
Sbjct: 307 TVVISPLISLMQDQVTHL----SKKGIP-ACFLSSIQTAAERLAILQKLANGNPIIKILY 361
Query: 130 GTPGRLCDHIR----GKGLNISHLKA-VVLDEADEMLDLG--FRDD---IEFILDSSPKK 179
TP ++ L L A V+DEA + G FR + + P
Sbjct: 362 VTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPG- 420
Query: 180 RRMLMFSATISPAITT-LAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIV-N 237
+ +AT + + + ++ + +S NR ++ Y D I+
Sbjct: 421 VPFIALTATATERVREDVIRSLGLRNPELFKSSFNR--PNLKYEVSPKTDKDALLDILEE 478
Query: 238 ILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARV 297
H ++ I++C +R + + VL L +ER + + RV
Sbjct: 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRV 538
Query: 298 CIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
+AT GID PD+ VIH L + E +GR GR G
Sbjct: 539 IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGL 581
>gnl|CDD|31395 COG1202, COG1202, Superfamily II helicase, archaea-specific
[General function prediction only].
Length = 830
Score = 58.0 bits (140), Expect = 6e-09
Identities = 74/357 (20%), Positives = 126/357 (35%), Gaps = 40/357 (11%)
Query: 6 NIPQVIGEALSERGYVNLTSVQE-AILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLA 64
+IP+ L G L VQ A+ L +++LV + T SGKT+ LA LL+
Sbjct: 200 DIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS 259
Query: 65 ENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIG----GVSVHRERRD 120
+ L + P LA Q + + Y+K G+ VA+ +G D
Sbjct: 260 GGKKM--------LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVD 311
Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDL--GFRDDIEFILDSSPK 178
A I+VGT + D++ G ++ + VV+DE + D G R LD
Sbjct: 312 TSPDADIIVGTYEGI-DYLLRTGKDLGDIGTVVIDEIHTLEDEERGPR------LDGLIG 364
Query: 179 KRRMLMFSATISPAITTLAKNYQ-KDAVRVNIASENRQHSDIDYRAVLVAL-SDRDNAIV 236
+ R L A T+ + + + + + ++ V S++ + I
Sbjct: 365 RLRYLFPGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIA 424
Query: 237 NILR----------YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNA 286
+++ Y G IVF +R L + L +ER +
Sbjct: 425 RLVKREFSTESSKGYRG--QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSV 482
Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN----PENLLHRSGRTGRAG 339
+ + T A G+D P +++ + GR GR
Sbjct: 483 ERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPD 539
>gnl|CDD|31308 COG1111, MPH1, ERCC4-like helicases [DNA replication,
recombination, and repair].
Length = 542
Score = 57.2 bits (138), Expect = 1e-08
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 237 NILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVAL---------SGELSQQERSNAL 287
L +G IVF R + L + + +SQ+E+ +
Sbjct: 359 EQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEII 418
Query: 288 QMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFV 347
R G V +AT V G+D+P+++LVI E + + R GRTGR RKG V +
Sbjct: 419 DQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVL 477
Query: 348 IPQN 351
+ +
Sbjct: 478 VTEG 481
Score = 37.9 bits (88), Expect = 0.008
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95
K+ LV TG GKT + + L L +APT+ L +Q
Sbjct: 28 LFKNTLVVLPTGLGKT-FIAAMVIANRLRWFGGK-------VLFLAPTKPLVLQHAEFCR 79
Query: 96 WLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
+ +A G V ER +L + V TP + + ++ +++ + ++ D
Sbjct: 80 KVTGIPEDEIAALTGEVRP-EEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFD 138
Query: 156 EA 157
EA
Sbjct: 139 EA 140
>gnl|CDD|31396 COG1203, COG1203, Predicted helicases [General function prediction
only].
Length = 733
Score = 55.9 bits (134), Expect = 3e-08
Identities = 67/355 (18%), Positives = 122/355 (34%), Gaps = 38/355 (10%)
Query: 17 ERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPL 76
GY E IL + R V++ A TG GKT A L LA LL E +
Sbjct: 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEAS-LILALALLDEKIK----LKSR 248
Query: 77 ALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHR-----------ERRDLQNGA 125
+ + P R + + R + V+ + S +
Sbjct: 249 VIYVLPFRTIIEDMYRRAK-EIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYK 307
Query: 126 HIVVGTPGRLCDHIRGKGLNISHLKA--------VVLDEADEMLDLGFRDDIEFILDSSP 177
+++ I + + V+LDE D + +L++
Sbjct: 308 KLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALA 367
Query: 178 KKR-RMLMFSATISPAITTLAKN-YQKDAVRVNIAS----ENRQHSDIDYRAVLVALSDR 231
+ +L+ SAT+ P + K K V A E+ R +
Sbjct: 368 EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQE 427
Query: 232 DNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMR 291
+ + K +V +T + L E +V+ L + ++R + ++
Sbjct: 428 ELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELK 487
Query: 292 D----GRARVCIATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKG 342
+ +AT V G+D+ D +++I EL+ ++L+ R+GR R G+K
Sbjct: 488 KLFKQNEGFIVVATQVIEAGVDI-DFDVLI-TELAP-IDSLIQRAGRVNRHGKKE 539
>gnl|CDD|35574 KOG0353, KOG0353, KOG0353, ATP-dependent DNA helicase [General
function prediction only].
Length = 695
Score = 55.2 bits (132), Expect = 5e-08
Identities = 73/323 (22%), Positives = 123/323 (38%), Gaps = 27/323 (8%)
Query: 26 VQEAILNPDLREKDVLVSAQTGSGKTVAFGL-ALASTLLAENDRFSPASAPLALAIAPTR 84
+Q A +N + +D + TG GK++ + L AL + D F+ PL +
Sbjct: 98 LQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLMEDQI 151
Query: 85 ELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIR---- 140
Q+G + L A + A V + + ++ TP ++ +
Sbjct: 152 LQLKQLGIDASMLNANSSKEEAK-----RVEAAITNKDSEFKLIYVTPEKIAKSKKFMNK 206
Query: 141 -GKGLNISHLKAVVLDEADEMLDLG--FRDDIEF--ILDSSPKKRRMLMFSATISPAITT 195
K L K + +DE G FR D + IL K ++ +AT + +
Sbjct: 207 LEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLD 266
Query: 196 LAKNYQK-DAVRVNIASENRQHSDIDYRAVLVALSDRD---NAIVNILRYHGAKNAIVFC 251
AK+ +A A NR ++ Y ++ D + I ++ I++C
Sbjct: 267 DAKDILCIEAAFTFRAGFNR--PNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYC 324
Query: 252 STRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP 311
++ + K L H A L +++S A Q G +V +AT GID P
Sbjct: 325 FSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKP 384
Query: 312 DLELVIHAELSSNPENLLHRSGR 334
D+ VIH L + EN S R
Sbjct: 385 DVRFVIHHSLPKSIENYYQASAR 407
>gnl|CDD|35573 KOG0352, KOG0352, KOG0352, ATP-dependent DNA helicase [Replication,
recombination and repair].
Length = 641
Score = 50.9 bits (121), Expect = 1e-06
Identities = 28/95 (29%), Positives = 41/95 (43%)
Query: 247 AIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAAR 306
IV+C TR + +L +A L ++ER+ + + V AT
Sbjct: 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGM 317
Query: 307 GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRK 341
G+D PD+ VIH S N SGR GR G++
Sbjct: 318 GVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKR 352
>gnl|CDD|31829 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
and repair].
Length = 845
Score = 50.3 bits (120), Expect = 1e-06
Identities = 85/331 (25%), Positives = 133/331 (40%), Gaps = 50/331 (15%)
Query: 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYA 99
V++ +TGSGKT L L + + P LA R +A +V EL
Sbjct: 68 VIIVGETGSGKTTQLPQFLLEEGLGIAGKIG-CTQPRRLA---ARSVAERVAEELG---E 120
Query: 100 KTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE 159
K G V I S R I V T G L I+ L +S V++DEA E
Sbjct: 121 KLGETVGYSIRFESKVSPR------TRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHE 173
Query: 160 MLDLGFRDDIE--FILDSSPKKR---RMLMFSATISPAITTLAKNYQKDAVRVNIASENR 214
DI + D ++R ++++ SAT+ Y +A + I E R
Sbjct: 174 RS---LNTDILLGLLKDLLARRRDDLKLIIMSATLDAERF---SAYFGNAPVIEI--EGR 225
Query: 215 QHS-DIDYRAVLVA---LSDRDNAIVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH--- 267
+ +I Y A L D A V+I G+ + +VF + + R + L +
Sbjct: 226 TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG 285
Query: 268 -LFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSS--- 323
+++ L G LS +E+ + G+ +V +AT++A + +P + VI + L+
Sbjct: 286 DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKR 345
Query: 324 -NPENLLHR-----------SGRTGRAGRKG 342
+P L R R GRAGR G
Sbjct: 346 YDPRTGLTRLETEPISKASADQRAGRAGRTG 376
>gnl|CDD|31393 COG1200, RecG, RecG-like helicase [DNA replication, recombination,
and repair / Transcription].
Length = 677
Score = 46.4 bits (110), Expect = 2e-05
Identities = 73/348 (20%), Positives = 125/348 (35%), Gaps = 88/348 (25%)
Query: 41 LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100
L+ GSGKTV +AL + L A A AL +APT LA Q L
Sbjct: 287 LLQGDVGSGKTV---VALLAMLAA-----IEAGYQAAL-MAPTEILAEQHYESLRKWLEP 337
Query: 101 TGVVVAVCIGGVSVHRERRDLQNG-----AHIVVGTPGRLCDHIRGKGLNISHLKAVVLD 155
G+ VA+ G + + R+++ IVVGT + D + L + V++D
Sbjct: 338 LGIRVALLTGSLKG-KARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGL-----VIID 391
Query: 156 E---------------ADEM--------------LDLGFRDDIEF-ILDSSPKKRRMLMF 185
E ++ L L D++ I+D P R+
Sbjct: 392 EQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRK---- 447
Query: 186 SATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILRYHGAK 245
P T + + ++ V I E + L+ S++ +
Sbjct: 448 -----PITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLE----------LQ 492
Query: 246 NAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
A L E +V + G + E+ ++ ++G + +AT V
Sbjct: 493 AAEELY------EELKSFLPE--LKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIE 544
Query: 306 RGIDLPDLELVI--HAE---LSSNPENLLHR-SGRTGRAGRKGMSVFV 347
G+D+P+ +++ +AE L+ LH+ GR GR + V +
Sbjct: 545 VGVDVPNATVMVIENAERFGLAQ-----LHQLRGRVGRGDLQSYCVLL 587
>gnl|CDD|33855 COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA
uptake (late competence protein) [DNA replication,
recombination, and repair].
Length = 441
Score = 43.0 bits (101), Expect = 2e-04
Identities = 60/332 (18%), Positives = 126/332 (37%), Gaps = 46/332 (13%)
Query: 23 LTSVQEAILNPDLRE----KDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLAL 78
L+ Q+ N ++ +D LV A TG+GKT + L + R AS
Sbjct: 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-NQGGRVCIAS----- 151
Query: 79 AIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDH 138
P ++ +++ L+ ++ + + ++ + A +VV T +L
Sbjct: 152 ---PRVDVCLELYPRLKQAFSNCDIDL--------LYGDSDSYFR-APLVVATTHQL--- 196
Query: 139 IRGKGLNISHLKAVVLDEADEMLDLGFRDD--IEFILDSSPKKRRMLMFSATISPAITTL 196
+R K +++DE D F DD +++ + + KK ++ T +P
Sbjct: 197 LRFK----QAFDLLIIDEVDA---FPFSDDQSLQYAVKKARKKEGATIY-LTATPTKKLE 248
Query: 197 AKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDR-------DNAIVNILRYH--GAKNA 247
K + + + + + + V + ++ + L +
Sbjct: 249 RKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308
Query: 248 IVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARG 307
++F ++ + L + L + S Q R ++ RDG+ + I T + RG
Sbjct: 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTTILERG 368
Query: 308 IDLPDLEL-VIHAELSS-NPENLLHRSGRTGR 337
+ P++++ V+ AE L+ +GR GR
Sbjct: 369 VTFPNVDVFVLGAEHRVFTESALVQIAGRVGR 400
>gnl|CDD|36169 KOG0951, KOG0951, KOG0951, RNA helicase BRR2, DEAD-box superfamily
[RNA processing and modification].
Length = 1674
Score = 42.3 bits (99), Expect = 4e-04
Identities = 80/411 (19%), Positives = 145/411 (35%), Gaps = 77/411 (18%)
Query: 18 RGYVNLTSVQEAILNPDLREKD-VLVSAQTGSGKT-VAFGLALASTLLAENDRFSPASAP 75
G +L +Q + + LR + +L+ A TG+GKT VA L + S AP
Sbjct: 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAP 364
Query: 76 LALA-IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGR 134
+ IAP + L ++ A G+ V G + +E+ + ++V TP +
Sbjct: 365 FKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIE---ETQVIVTTPEK 421
Query: 135 LCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAIT 194
D I K + ++ + V L DE+ L DD +L+S + S +
Sbjct: 422 W-DIITRKSGDRAYEQLVRLLIIDEIHLLH--DDRGPVLESIVARTFRRSESTEEGSRLV 478
Query: 195 TLAK---NYQKDAVRVNIASENRQHSDIDYR---------AVLVALSDRDNAIVN----- 237
L+ NY+ A + + E + D YR + + +N
Sbjct: 479 GLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYE 538
Query: 238 -ILRYHGAKNAIVF-----------------CSTRASVSRFTK-------VLAEHLFQVV 272
+L + G +VF ++SRF + +L Q
Sbjct: 539 KVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAK 598
Query: 273 ALS-------------GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHA 319
L++++R + DG +V ++T A G++LP ++I
Sbjct: 599 NPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKG 658
Query: 320 ELSSNPE----------NLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
+PE +++ GR GR +I + +E +
Sbjct: 659 TQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD---HSELQY 706
>gnl|CDD|34219 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 41.9 bits (98), Expect = 4e-04
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 19/165 (11%)
Query: 27 QEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL 86
QEAI + R + VLV A T SGKTV A+A L +P + L
Sbjct: 125 QEAIAILE-RGESVLVCAPTSSGKTVVAEYAIALALRDGQRVI---------YTSPIKAL 174
Query: 87 AVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNI 146
+ Q R+L + +V + G VS++ A +V T L + + ++
Sbjct: 175 SNQKYRDLLAKFGDVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESL 227
Query: 147 SHLKAVVLDEADEMLDLGFRDDI-EFILDSSPKKRRMLMFSATIS 190
++ VV DE + D R + E ++ P R + SAT+
Sbjct: 228 RDIEWVVFDEVHYIGD-RERGVVWEEVIILLPDHVRFVFLSATVP 271
>gnl|CDD|39353 KOG4150, KOG4150, KOG4150, Predicted ATP-dependent RNA helicase
[RNA processing and modification].
Length = 1034
Score = 39.7 bits (92), Expect = 0.002
Identities = 63/387 (16%), Positives = 130/387 (33%), Gaps = 63/387 (16%)
Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLL 63
+E+I ++ + E G ++ +L + + +GK
Sbjct: 272 WESIRSLLNKNTGESGI----AISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQT 327
Query: 64 AENDRFSPASAPLALAIAPTRELAVQVGR----ELEWLYAKTGVVVAVCIGGVSVHRERR 119
A+ +L + E + +E + A+ V + +S +
Sbjct: 328 LC-----HATN--SLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMS-DKLSETTKSA 379
Query: 120 DLQNGAHIVVGTPGRLCDHIRGKGLN----ISHLKAVVLDE------------ADEM--- 160
+ G + + K L + + D++
Sbjct: 380 LKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRAL 439
Query: 161 LDL--GFRDDI--EFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
DL GF I +P K R + S + + L V ++ + + +
Sbjct: 440 SDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELEL--------VTIDGSPSSEKL 491
Query: 217 SDI-DYRAVLVALSDRDNAIVNI------LRYHGAKNAIVFCSTRASVSRFTK----VLA 265
+ + A + S++ + +V + + HG + I FC +R +LA
Sbjct: 492 FVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLR-CIAFCPSRKLCELVLCLTREILA 550
Query: 266 E---HLFQ-VVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAEL 321
E HL + + + G ++R + G+ IAT+ GID+ L+ V+H
Sbjct: 551 ETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF 610
Query: 322 SSNPENLLHRSGRTGRAGRKGMSVFVI 348
+ NL ++GR GR + ++V+V
Sbjct: 611 PGSIANLWQQAGRAGRRNKPSLAVYVA 637
>gnl|CDD|36218 KOG1000, KOG1000, KOG1000, Chromatin remodeling protein
HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure
and dynamics].
Length = 689
Score = 39.3 bits (91), Expect = 0.003
Identities = 37/185 (20%), Positives = 66/185 (35%), Gaps = 11/185 (5%)
Query: 172 ILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSD---IDYR-AVLVA 227
+L P KRR +++ + I + K A + + + + Y +
Sbjct: 416 VLKQLPPKRREVVYVSG--GRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAK 473
Query: 228 LSDRDNAIVNILRY--HGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSN 285
+ I+ + +VF + + + + + + G R+
Sbjct: 474 AAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTL 533
Query: 286 ALQMMR-DGRARVCIATDVAAR-GIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGM 343
Q + RV + + AA G+ L +V+ AEL NP LL R R G+K
Sbjct: 534 LCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKS- 592
Query: 344 SVFVI 348
SVFV
Sbjct: 593 SVFVQ 597
>gnl|CDD|31307 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 38.4 bits (89), Expect = 0.005
Identities = 39/156 (25%), Positives = 56/156 (35%), Gaps = 29/156 (18%)
Query: 35 LREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGREL 94
+R K + A TG GKT FGL ++ L + R I PT L QV L
Sbjct: 95 VRGKSFAIIAPTGVGKT-TFGLLMSLYLAKKGKR--------VYIIVPTTTLVRQVYERL 145
Query: 95 EWLYAKTGVV-VAVCIGGVSVHRERRDL-----QNGAHIVVGTPGRLCDHIRGKGLNISH 148
+ G + V V +E+ + I++ T L +S
Sbjct: 146 KKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE----ELSK 201
Query: 149 LKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLM 184
LK D F DD++ IL +S R+L
Sbjct: 202 LK----------FDFIFVDDVDAILKASKNVDRLLR 227
>gnl|CDD|36170 KOG0952, KOG0952, KOG0952, DNA/RNA helicase MER3/SLH1, DEAD-box
superfamily [RNA processing and modification].
Length = 1230
Score = 37.6 bits (87), Expect = 0.009
Identities = 60/281 (21%), Positives = 106/281 (37%), Gaps = 49/281 (17%)
Query: 19 GYVNLTSVQEAILNPDLREK-DVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLA 77
+ +Q + + ++L+ A TGSGKTV L + T+ ++ A
Sbjct: 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFK 166
Query: 78 LA-IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLC 136
+ IAP + LA ++ + A G+ V G + + ++ + I+V TP +
Sbjct: 167 IVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKT--EIAD-TQIIVTTPEKW- 222
Query: 137 DHIRGKGLN----ISHLKAVVLDEADEMLDLGFRDD----IEFIL-------DSSPKKRR 181
D + K + S ++ V++DE +L DD +E I+ +SS R
Sbjct: 223 DVVTRKSVGDSALFSLVRLVIIDEV-HLL----HDDRGPVLETIVARTLRLVESSQSMIR 277
Query: 182 MLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAV--------------LVA 227
++ SAT+ P +A +RVN D YR V
Sbjct: 278 IVGLSATL-PNYEDVA-----RFLRVN-PYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQ 330
Query: 228 LSDRDNA-IVNILRYHGAKNAI-VFCSTRASVSRFTKVLAE 266
+ D ++ + + + VF +R R K L E
Sbjct: 331 KKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRE 371
Score = 28.4 bits (63), Expect = 5.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 31 LNPDLREKDVLVSAQTGSG--KTVAFGLALASTLLAENDR 68
LN D E ++++S + T+ FG+ L L ENDR
Sbjct: 1187 LNMDELELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDR 1226
>gnl|CDD|30902 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 36.3 bits (84), Expect = 0.021
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 254 RASVSRFTKVLAEHL--------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAA 305
R V+ TK +AE L +V L ++ ER ++ +R G V + ++
Sbjct: 448 RVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507
Query: 306 RGIDLPDLELVIHAELSSNPENLLHRSGRT-----GRAGR--KGMSVF---VIPQNMQRR 355
G+DLP++ LV A L ++ E L RS R+ GRA R G + I +MQ+
Sbjct: 508 EGLDLPEVSLV--AILDADKEGFL-RSERSLIQTIGRAARNVNGKVILYADKITDSMQKA 564
Query: 356 AERLFREANVSVVWE------PAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLA 409
+ R + + + P + IR+ IL D + +K +
Sbjct: 565 IDETERRREIQMAYNEEHGITPQTIKKKIRD-----ILDGEYEEDEYKAKIEKKASKMSK 619
Query: 410 KHDPEKI 416
K + I
Sbjct: 620 KELEKLI 626
>gnl|CDD|36142 KOG0924, KOG0924, KOG0924, mRNA splicing factor ATP-dependent RNA
helicase [RNA processing and modification].
Length = 1042
Score = 32.7 bits (74), Expect = 0.28
Identities = 75/367 (20%), Positives = 133/367 (36%), Gaps = 72/367 (19%)
Query: 17 ERGYVNLTSVQEAILNPDLREKDV-LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAP 75
+R Y+ + + ++ +L+ +RE V ++ +TGSGKT L A+N
Sbjct: 351 QRQYLPVFACRDQLLS-VIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPR 409
Query: 76 LALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRL 135
AI+ + +A ++G L G V G S+ E ++ I T G L
Sbjct: 410 RVAAISVAKRVAEEMGVTL-------GDTV-----GYSIRFEDVTSED-TKIKYMTDGIL 456
Query: 136 CDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEF-ILDSSPKKRR---MLMFSATIS- 190
++ +++DEA E DI F +L +RR +++ SAT+
Sbjct: 457 LRESLKDR-DLDKYSVIIMDEAHER---SLNTDILFGLLKKVLARRRDLKLIVTSATMDA 512
Query: 191 ----------PAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
P T + Y V + + DY V A+ V I
Sbjct: 513 QKFSNFFGNCPQFTIPGRTY---PVEIMYTKTPVE----DY--VEAAVKQA----VQIHL 559
Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQ----------VVALSGELSQQERSNALQMM 290
+ ++F + + + ++ E L Q V+ + +L ++ Q
Sbjct: 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKA 619
Query: 291 RDGRARVCIATDVAARGIDLPDLELVIHA---------------ELSSNPENLLHRSGRT 335
G + +AT++A + +P + VI L P + + R
Sbjct: 620 EGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRA 679
Query: 336 GRAGRKG 342
GRAGR G
Sbjct: 680 GRAGRTG 686
>gnl|CDD|36166 KOG0948, KOG0948, KOG0948, Nuclear exosomal RNA helicase MTR4,
DEAD-box superfamily [RNA processing and modification].
Length = 1041
Score = 32.6 bits (74), Expect = 0.33
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 28 EAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL 86
AI D R + VLVSA T +GKTV A+A + L E R S AL+ REL
Sbjct: 136 TAIKCID-RGESVLVSAHTSAGKTVVAEYAIAMS-LREKQRVIYTSPIKALSNQKYREL 192
>gnl|CDD|36167 KOG0949, KOG0949, KOG0949, Predicted helicase, DEAD-box superfamily
[General function prediction only].
Length = 1330
Score = 32.3 bits (73), Expect = 0.33
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAE-LSSNPENLLHRSGRTG 336
L+++ RS + R G +V AT+ + GI++P +V + L +P N +GR G
Sbjct: 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAG 1031
Query: 337 RAG 339
R G
Sbjct: 1032 RRG 1034
>gnl|CDD|36168 KOG0950, KOG0950, KOG0950, DNA polymerase theta/eta, DEAD-box
superfamily [General function prediction only].
Length = 1008
Score = 32.3 bits (73), Expect = 0.36
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 278 LSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSNPEN----LLHRSG 333
L+ +ER R+G V +AT A G++LP ++I A G
Sbjct: 532 LTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVG 591
Query: 334 RTGRAG--RKGMSVFVIPQNMQRRAERLFREA 363
R GR G G S+ +I + ++R L
Sbjct: 592 RAGRTGIDTLGDSILIIKSSEKKRVRELVNSP 623
>gnl|CDD|147155 pfam04851, ResIII, Type III restriction enzyme, res subunit.
Length = 103
Score = 32.2 bits (74), Expect = 0.37
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 22 NLTSVQEAILNPDLREKDVLVSAQTGSGKT-VAFGLALASTLLAENDRFSPASAPLALAI 80
L Q + L +K L+ TGSGKT A L + L +
Sbjct: 3 ELRPYQIEAIRNLLEKKRGLIVMATGSGKTLTAAKLIARLLKGKKK----------VLFL 52
Query: 81 APTRELAVQ 89
P ++L Q
Sbjct: 53 VPRKDLLEQ 61
>gnl|CDD|36165 KOG0947, KOG0947, KOG0947, Cytoplasmic exosomal RNA helicase SKI2,
DEAD-box superfamily [RNA processing and modification].
Length = 1248
Score = 31.9 bits (72), Expect = 0.51
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 23/164 (14%)
Query: 27 QEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTREL 86
+EAI + R V V+A T +GKTV A+A + +P + L
Sbjct: 303 KEAIYHL-ERGDSVFVAAHTSAGKTVVAEYAIALAQ---------KHMTRTIYTSPIKAL 352
Query: 87 AVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHI-RGKGLN 145
+ Q R+ + + G++ G V ++ E A ++ T L + RG L
Sbjct: 353 SNQKFRDFKETFGDVGLLT----GDVQINPE-------ASCLIMTTEILRSMLYRGADL- 400
Query: 146 ISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATI 189
I ++ V+ DE + D+ E ++ P+ ++ SAT+
Sbjct: 401 IRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444
>gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 31.5 bits (71), Expect = 0.70
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
T ++RF +V L LS ER + R G ARV I T A + +
Sbjct: 258 TPQLLARFKARFGA---KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFKN 313
Query: 313 LELVI 317
L L+I
Sbjct: 314 LGLII 318
Score = 28.4 bits (63), Expect = 6.4
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 286 ALQMMRDGRARVCIATDVAARGIDLPDLELV--IHAELSSN------PENLLHR----SG 333
L +G A + I T + A+G D P++ LV + A+ E +G
Sbjct: 526 LLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAG 585
Query: 334 RTGRAGRKG 342
R GRAG+ G
Sbjct: 586 RAGRAGKPG 594
>gnl|CDD|38299 KOG3089, KOG3089, KOG3089, Predicted DEAD-box-containing helicase
[General function prediction only].
Length = 271
Score = 30.8 bits (69), Expect = 1.1
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 73 SAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNG-AHIVVGT 131
L L I + A+++ + ++ G V+ + + V + + L+ H+ +GT
Sbjct: 144 VFVLMLIICSSAVRALELIKSMKAFRGSDGKVIKLFAKHIKVQAQVKLLKKRVVHLGIGT 203
Query: 132 PGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMF 185
PGR+ + ++ G N+S LK ++LD + +RD K R+L
Sbjct: 204 PGRIKELVKQGGFNLSPLKFIILDWS-------WRD---------QKLNRILDI 241
>gnl|CDD|35610 KOG0389, KOG0389, KOG0389, SNF2 family DNA-dependent ATPase
[Chromatin structure and dynamics].
Length = 941
Score = 30.3 bits (68), Expect = 1.6
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 299 IATDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR-KGMSVF------VIPQN 351
++T GI+L VI ++ NP + R R G+ K ++V+ I +
Sbjct: 834 LSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEG 893
Query: 352 MQRRAER-LFREANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGD 399
+ R A+ L EA+++ E VE E+ ++L+ L+ D+ + +
Sbjct: 894 ILRLAKTKLALEADLT---EDGKGVEDEGEKTVGKLLETELYGDNRKPE 939
>gnl|CDD|39006 KOG3802, KOG3802, KOG3802, Transcription factor OCT-1, contains POU
and HOX domains [Transcription].
Length = 398
Score = 29.7 bits (66), Expect = 2.5
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 20/83 (24%)
Query: 145 NISHLKAVV---LDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPA--------- 192
N+ LK ++ L+EA+ G + IE I S K+++ + A
Sbjct: 258 NMCKLKPLLEKWLEEAESRESTGSPNSIEKIGAQSRKRKKRTSIEVNVRGALEKHFLKNP 317
Query: 193 ------ITTLAK--NYQKDAVRV 207
IT +A+ +K+ VRV
Sbjct: 318 KPTSQEITHIAESLQLEKEVVRV 340
>gnl|CDD|31633 COG1444, COG1444, Predicted P-loop ATPase fused to an
acetyltransferase [General function prediction only].
Length = 758
Score = 29.1 bits (65), Expect = 3.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 34 DLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPA--SAPLALAIAPTRELAVQVG 91
D ++ ++++A G GK+ A G+ALA A +AP A + L G
Sbjct: 228 DAPKRALVLTADRGRGKSAALGIALA--AAARLAGSVRIIVTAP---TPANVQTLFEFAG 282
Query: 92 RELEWLYAKTGVV 104
+ LE+L K V
Sbjct: 283 KGLEFLGYKRKVA 295
>gnl|CDD|36138 KOG0920, KOG0920, KOG0920, ATP-dependent RNA helicase A [RNA
processing and modification].
Length = 924
Score = 29.1 bits (65), Expect = 3.6
Identities = 76/395 (19%), Positives = 145/395 (36%), Gaps = 97/395 (24%)
Query: 13 EALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKT---VAFGL-------ALASTL 62
E L R + +++ IL+ + V++S +TG GKT F L A + +
Sbjct: 164 EMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNII 223
Query: 63 LAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQ 122
+ R S AI+ +A +V +E G V G V E +
Sbjct: 224 CTQPRRIS--------AIS----VAERVAKERGE---SLGEEV-----GYQVRLESK-RS 262
Query: 123 NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADE------MLDLGFRDDIEFILDSS 176
++ T G L ++ +S + +++DE E L + +D +L +
Sbjct: 263 RETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKD----LLPRN 317
Query: 177 PKKRRMLMFSATI-----------SPAITT------LAKNYQKDAV---RVNIASEN--- 213
P + +LM SAT+ P IT + + + +D + ++
Sbjct: 318 PDLKVILM-SATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARS 376
Query: 214 -RQHSDIDYRAVLVALSDRD-NAIVNILRY----HGAKNAIVFCSTRASVSRFTKVLAEH 267
+ S + + + + D + I +++ Y +VF + + ++L +
Sbjct: 377 GPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVN 436
Query: 268 L-------FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI--- 317
L F ++ L + +E+ + G ++ +AT++A I + D+ VI
Sbjct: 437 LPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSG 496
Query: 318 -HAELSSNPE--------------NLLHRSGRTGR 337
E S +PE N R GR GR
Sbjct: 497 LVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR 531
>gnl|CDD|33203 COG3396, COG3396, Uncharacterized conserved protein [Function
unknown].
Length = 265
Score = 28.4 bits (63), Expect = 6.0
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 220 DYRAVLVALSDR--DNAIVNILRY-----HGAKNAIVFCSTRASVSRFTKVLAEHLFQVV 272
YR L+ L + D+ +V LR H +++ + H + +
Sbjct: 15 AYRRTLIRLISQLADSELVLALREGEWLGHAPT-----LEEDLALANIVQDEMGHGWLLY 69
Query: 273 ALSGELSQQERSNALQMMRDGRAR 296
L+ EL + R + L +RDGR +
Sbjct: 70 RLAEELEGKGREDDLAYLRDGRHK 93
>gnl|CDD|34068 COG4346, COG4346, Predicted membrane-bound
dolichyl-phosphate-mannose-protein mannosyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 438
Score = 28.1 bits (62), Expect = 6.4
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 52 VAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGG 111
VAF AL LA NDR + L LA A + V L + K + I G
Sbjct: 212 VAFFTALFMYFLA-NDRPLWSGIALGLA-ASVKLSGAFVFPILWYAILKENDLKERFIAG 269
Query: 112 V 112
+
Sbjct: 270 I 270
>gnl|CDD|35384 KOG0162, KOG0162, KOG0162, Myosin class I heavy chain
[Cytoskeleton].
Length = 1106
Score = 28.0 bits (62), Expect = 7.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 4 FENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVA 53
+EN P + AL++ Y N+ E + V++S ++G+GKTVA
Sbjct: 81 YENPPHIY--ALADNMYRNMKIDNE--------NQCVIISGESGAGKTVA 120
>gnl|CDD|31390 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 27.9 bits (62), Expect = 7.4
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 276 GELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVI--HAE---LSSNPENLLH 330
G++ ++E + +G V + T + GID+P+ +I A+ L+ L+
Sbjct: 837 GQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQ-----LY 891
Query: 331 R-SGRTGRAGRKGMSVFVIPQN--MQRRAER 358
+ GR GR+ ++ + F+ P + AE+
Sbjct: 892 QLRGRVGRSNKQAYAYFLYPPQKALTEDAEK 922
>gnl|CDD|109807 pfam00764, Arginosuc_synth, Arginosuccinate synthase. This family
contains a PP-loop motif.
Length = 389
Score = 28.1 bits (63), Expect = 7.6
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 18/66 (27%)
Query: 94 LEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVV 153
+ WL K V+AV + VG D R K L + +K V
Sbjct: 14 IPWLKEKYYEVIAVAVD------------------VGQGEEDLDEAREKALKLGAVKHYV 55
Query: 154 LDEADE 159
+D +E
Sbjct: 56 IDAKEE 61
>gnl|CDD|32525 COG2378, COG2378, Predicted transcriptional regulator
[Transcription].
Length = 311
Score = 27.7 bits (61), Expect = 8.6
Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 13/161 (8%)
Query: 113 SVHRERRDLQNGAHIVVGTPG-----RLCDHIRGKGLNISHLKAVVLDEADEMLD----- 162
+++R+ L+ + G G RL + L + +A L A L
Sbjct: 38 TIYRDIATLRAAGVPIEGERGKGGGYRLRPGFKLPPLMFTEEEAEALLLALRALASRGGA 97
Query: 163 ---LGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDI 219
+ I P+ R + + I + ++ + A +
Sbjct: 98 ELAQAALKALSKIAAVLPEALRRKLEAIAILAPVFGKRNEDRETLAILRQAIREEKVLSF 157
Query: 220 DYRAVLVALSDRDNAIVNILRYHGAKNAIVFCSTRASVSRF 260
DYR ++R + ++ G + +C R F
Sbjct: 158 DYRDSSGEETERIVEPLGLVFKGGHWYLVAWCELRQDFRTF 198
>gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 27.9 bits (62), Expect = 8.9
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 502 IRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKY------LGGEKPDFR--GYKSSGFKS 553
+R ++ FV+ +D + V L ++ Y LG E F G F
Sbjct: 67 LRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGL 126
Query: 554 KNSQDGATKRFKRFKGA 570
K +D A + + A
Sbjct: 127 KTLED-ALRLRRHLLEA 142
>gnl|CDD|30100 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle..
Length = 674
Score = 27.5 bits (61), Expect = 9.4
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 3 IFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVA 53
+E P + AL++ Y ++ S E + V++S ++G+GKT A
Sbjct: 62 RYELPPHIY--ALADNAYRSMKSENE--------NQCVIISGESGAGKTEA 102
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.135 0.382
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,703,616
Number of extensions: 362020
Number of successful extensions: 1203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1098
Number of HSP's successfully gapped: 101
Length of query: 573
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 474
Effective length of database: 4,124,446
Effective search space: 1954987404
Effective search space used: 1954987404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)