BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] (573 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/573 (100%), Positives = 573/573 (100%) Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS Sbjct: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60 Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD Sbjct: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120 Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR Sbjct: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180 Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR Sbjct: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240 Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA Sbjct: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300 Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF Sbjct: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360 Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF Sbjct: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420 Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE Sbjct: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480 Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK Sbjct: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540 Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN Sbjct: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573 >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 187 bits (475), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 110/344 (31%), Positives = 185/344 (53%), Gaps = 7/344 (2%) Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67 P+V+ L + GYV T +Q + L+ DV AQTG+GKT +F L + + L Sbjct: 10 PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68 Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127 R P L + PTRELA QV E + VA+ IGG+ + + L+ GA + Sbjct: 69 R---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125 Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187 ++ TPGR+ DH L +++++ +V+DEAD MLD+GF I+ I P R+ L+FSA Sbjct: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185 Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDR-DNAIVNILRYHGA 244 T++ + +++N+ ++ R+ + + + I+ + A S + + Sbjct: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245 Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304 KN I+FC+ + +V L + F V A+ G + Q+ R L ++G ++ +A+D+A Sbjct: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305 Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348 ARG+D+PD+ V + ++ + EN +HR GRTGRAGR G + ++ Sbjct: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 52.0 bits (123), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 74/318 (23%), Positives = 130/318 (40%), Gaps = 50/318 (15%) Query: 41 LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100 ++ GSGKT+ +A+A+ + A A+ +AP LA Q ++ Sbjct: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347 Query: 101 TGVVVAVCIGGVSVHRERRDLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156 T ++V + G + R+ L+ AHI++GT D I+ L +L Sbjct: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399 Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216 DE G + ++ L +L+ +AT P L D ++ R+ Sbjct: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK- 456 Query: 217 SDIDYRAVLVALSDRDNAI--VNILRYHGAKNAIVFC---------STRASVSRFTKVLA 265 + V++ ++ D I + ++ G K A C + R+ V RF L Sbjct: 457 ---PIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNS-LH 511 Query: 266 EHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324 EH +A+ G +S ++ + + ++G ++ IAT V GID+ D ++I N Sbjct: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IEN 567 Query: 325 PENL----LHR-SGRTGR 337 E+ LH+ GR GR Sbjct: 568 AEHFGLAQLHQLRGRVGR 585 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 35.8 bits (81), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/328 (20%), Positives = 133/328 (40%), Gaps = 40/328 (12%) Query: 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95 R D L+ G GKT +AL + +A + A IAPT L Q R Sbjct: 645 RLMDRLICGDVGFGKT---EIALRAAFIAVMNGLQVA------VIAPTTLLVRQHFRLFS 695 Query: 96 WLYAKTGVVVA-----VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLK 150 + V +A V ++H+ + + IV+GT L + ++L Sbjct: 696 ERFQGFSVRIASISRFVQTKEAALHK-KSITEGQVDIVIGTHALL-----NPKITFANLG 749 Query: 151 AVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210 +++DE ++ + ++ L + +L SAT P LA ++ +++ Sbjct: 750 LIIIDE-EQHFGVKHKEA----LKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMP 804 Query: 211 SENRQHSDIDYRAVLVALSDRDNAIV--NILR-YHGAKNAIVFCSTRASVSRFTKVLAEH 267 NR A ++S D +V ++R Y+ + C + + + L Sbjct: 805 PINR-------IACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSE 857 Query: 268 L--FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP--DLELVIHAELSS 323 + ++ G++S + + + +G+ V ++T + G+DLP + +V A++ Sbjct: 858 VPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG 917 Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQN 351 + L GR GR+ ++F++P+N Sbjct: 918 LAQ-LYQLRGRVGRSKIASFALFLLPEN 944 >gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus str. psy62] Length = 731 Score = 29.6 bits (65), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%) Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELV---------IHAELSSNPENLLHRSGRTGR 337 L + G + I T + A+G + P + LV +A+L S+ S TGR Sbjct: 529 LSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGR 588 Query: 338 AGRKGMSVFVIPQNMQ 353 AGR G+ + Q Q Sbjct: 589 AGRFGLKSLGLIQAYQ 604 >gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 28.9 bits (63), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%) Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312 T+ T+ L E +V + E+ ER ++ +R G+ V + ++ G+D+P+ Sbjct: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650 Query: 313 LELVIHAELSSNPENLLHRSGRT-----GRAGR 340 LV A L ++ E L RS + GRA R Sbjct: 651 CGLV--AILDADKEGFL-RSKTSLIQTIGRAAR 680 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 28.9 bits (63), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%) Query: 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91 R +L++ TGSGK+VA + S L R +PA L + EL+V G Sbjct: 453 RMPHLLIAGTTGSGKSVAINTMILSLLY----RMTPAQCRLIMIDPKMLELSVYDG 504 >gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 744 Score = 26.2 bits (56), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Query: 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91 +LV+ TGSGK+VA + S L R P + + EL+V G Sbjct: 415 ILVAGTTGSGKSVAINTMIMSLLY----RLRPDECRMIMVDPKMLELSVYDG 462 >gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 25.8 bits (55), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 18/97 (18%) Query: 260 FTKVLAEHLFQV-----VALSGELSQQERSNALQMMRDGRARVCIATDV----------- 303 FT + EH+ + V+ E+SQ R + Q R+G+ + A D+ Sbjct: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSIDQKRM 390 Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340 + + + + +S+PE+ + S TGR R Sbjct: 391 FEKFLTQSKISTIFTTRFTSSPESYIKDS--TGRPVR 425 >gi|254780535|ref|YP_003064948.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 247 Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust. Identities = 8/33 (24%), Positives = 20/33 (60%) Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267 I +++ + G + +C+ ++ ++ FTK LA+ Sbjct: 139 ITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQE 171 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 25.4 bits (54), Expect = 2.5, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 480 EARWLMPMLCRSSGINRQSIG-AIRVQPDLTFVEVSADGVD 519 E LMP I R S+ A+ + PDL F++ G+D Sbjct: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182 >gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 25.4 bits (54), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%) Query: 21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 +NL Q I++ L K + A GSGKTV+ AL+ L L I Sbjct: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKS--------VLVI 52 Query: 81 APTR 84 AP R Sbjct: 53 APLR 56 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 25.4 bits (54), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 10/67 (14%) Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA----HIVVGTPGRL 135 + R+ ++ G+ ++W A++ ++C G V +D + G H + L Sbjct: 590 LMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAI------L 643 Query: 136 CDHIRGK 142 CD GK Sbjct: 644 CDQETGK 650 >gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus str. psy62] Length = 231 Score = 24.6 bits (52), Expect = 4.6, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 420 FLRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGS 459 F +IH L +PE+++ V L + G D R K GG+ Sbjct: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGA 101 >gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 122 Score = 24.3 bits (51), Expect = 5.6, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Query: 516 DGVDLLRRTVKLDKGIQLKYLGG-----EKPDFRGYKSSGFKSK 554 DG++L RR +LD +++ ++ G PD K++ SK Sbjct: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103 >gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 23.5 bits (49), Expect = 9.1, Method: Compositional matrix adjust. Identities = 13/55 (23%), Positives = 24/55 (43%) Query: 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96 + TG+ + G A+ + L N ++ L I +RELA + ++W Sbjct: 346 IPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDW 400 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.382 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 339,646 Number of Sequences: 1233 Number of extensions: 13661 Number of successful extensions: 56 Number of sequences better than 100.0: 18 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 21 length of query: 573 length of database: 328,796 effective HSP length: 79 effective length of query: 494 effective length of database: 231,389 effective search space: 114306166 effective search space used: 114306166 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 41 (20.4 bits)