BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase
protein [Candidatus Liberibacter asiaticus str. psy62]
(573 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 573/573 (100%), Positives = 573/573 (100%)
Query: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS
Sbjct: 1 MKIFENIPQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALAS 60
Query: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD
Sbjct: 61 TLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRD 120
Query: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR
Sbjct: 121 LQNGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKR 180
Query: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR
Sbjct: 181 RMLMFSATISPAITTLAKNYQKDAVRVNIASENRQHSDIDYRAVLVALSDRDNAIVNILR 240
Query: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA
Sbjct: 241 YHGAKNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIA 300
Query: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF
Sbjct: 301 TDVAARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVIPQNMQRRAERLF 360
Query: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF
Sbjct: 361 REANVSVVWEPAPSVEAIRERDAQRILQDPLFLDSIQGDEKKMVDVLLAKHDPEKIAAGF 420
Query: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE
Sbjct: 421 LRIHRAGLCAPEEITPVSLVSGRDRFRDDSRAFKVGGGSRDNFKGSSWFSLSVGSKQKAE 480
Query: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK
Sbjct: 481 ARWLMPMLCRSSGINRQSIGAIRVQPDLTFVEVSADGVDLLRRTVKLDKGIQLKYLGGEK 540
Query: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN
Sbjct: 541 PDFRGYKSSGFKSKNSQDGATKRFKRFKGASKN 573
>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 465
Score = 187 bits (475), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/344 (31%), Positives = 185/344 (53%), Gaps = 7/344 (2%)
Query: 8 PQVIGEALSERGYVNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAEND 67
P+V+ L + GYV T +Q + L+ DV AQTG+GKT +F L + + L
Sbjct: 10 PKVVCAVL-DAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRA 68
Query: 68 RFSPASAPLALAIAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGAHI 127
R P L + PTRELA QV E + VA+ IGG+ + + L+ GA +
Sbjct: 69 R---VRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADV 125
Query: 128 VVGTPGRLCDHIRGKGLNISHLKAVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSA 187
++ TPGR+ DH L +++++ +V+DEAD MLD+GF I+ I P R+ L+FSA
Sbjct: 126 LICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSA 185
Query: 188 TISPAITTLAKNYQKDAVRVNIASENRQHSDID--YRAVLVALSDR-DNAIVNILRYHGA 244
T++ + +++N+ ++ R+ + + + I+ + A S + +
Sbjct: 186 TMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLLQSQDTM 245
Query: 245 KNAIVFCSTRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVA 304
KN I+FC+ + +V L + F V A+ G + Q+ R L ++G ++ +A+D+A
Sbjct: 246 KNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLA 305
Query: 305 ARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGRKGMSVFVI 348
ARG+D+PD+ V + ++ + EN +HR GRTGRAGR G + ++
Sbjct: 306 ARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLV 349
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 52.0 bits (123), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 130/318 (40%), Gaps = 50/318 (15%)
Query: 41 LVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEWLYAK 100
++ GSGKT+ +A+A+ + A A+ +AP LA Q ++
Sbjct: 297 ILQGDVGSGKTLVALIAMAAAVEAGGQ---------AVIMAPIGILAQQHYEFIKKYTQN 347
Query: 101 TGVVVAVCIGGVSVHRERRDLQ----NGAHIVVGTPGRLCDHIRGKGLNISHLKAVVLDE 156
T ++V + G + R+ L+ AHI++GT D I+ L +L
Sbjct: 348 TQIIVEIITGNMPQAHRRKALERIAHGQAHIIIGTHALFQDSIQYYKL--------ILVI 399
Query: 157 ADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIASENRQH 216
DE G + ++ L +L+ +AT P L D ++ R+
Sbjct: 400 VDEQHRFGVQQRLK--LTQKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK- 456
Query: 217 SDIDYRAVLVALSDRDNAI--VNILRYHGAKNAIVFC---------STRASVSRFTKVLA 265
+ V++ ++ D I + ++ G K A C + R+ V RF L
Sbjct: 457 ---PIKTVIIPINRIDEVIERLKVVLSEG-KKAYWICPQIEEKKESNFRSVVERFNS-LH 511
Query: 266 EHLFQVVAL-SGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPDLELVIHAELSSN 324
EH +A+ G +S ++ + + ++G ++ IAT V GID+ D ++I N
Sbjct: 512 EHFTSSIAIIHGRMSDIDKESVMDSFKNGTCKLLIATTVIEVGIDVVDASIII----IEN 567
Query: 325 PENL----LHR-SGRTGR 337
E+ LH+ GR GR
Sbjct: 568 AEHFGLAQLHQLRGRVGR 585
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 35.8 bits (81), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/328 (20%), Positives = 133/328 (40%), Gaps = 40/328 (12%)
Query: 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELE 95
R D L+ G GKT +AL + +A + A IAPT L Q R
Sbjct: 645 RLMDRLICGDVGFGKT---EIALRAAFIAVMNGLQVA------VIAPTTLLVRQHFRLFS 695
Query: 96 WLYAKTGVVVA-----VCIGGVSVHRERRDLQNGAHIVVGTPGRLCDHIRGKGLNISHLK 150
+ V +A V ++H+ + + IV+GT L + ++L
Sbjct: 696 ERFQGFSVRIASISRFVQTKEAALHK-KSITEGQVDIVIGTHALL-----NPKITFANLG 749
Query: 151 AVVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATISPAITTLAKNYQKDAVRVNIA 210
+++DE ++ + ++ L + +L SAT P LA ++ +++
Sbjct: 750 LIIIDE-EQHFGVKHKEA----LKETHTGVHVLTLSATPIPRTLQLAITGVRELSLISMP 804
Query: 211 SENRQHSDIDYRAVLVALSDRDNAIV--NILR-YHGAKNAIVFCSTRASVSRFTKVLAEH 267
NR A ++S D +V ++R Y+ + C + + + L
Sbjct: 805 PINR-------IACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSE 857
Query: 268 L--FQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLP--DLELVIHAELSS 323
+ ++ G++S + + + +G+ V ++T + G+DLP + +V A++
Sbjct: 858 VPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFG 917
Query: 324 NPENLLHRSGRTGRAGRKGMSVFVIPQN 351
+ L GR GR+ ++F++P+N
Sbjct: 918 LAQ-LYQLRGRVGRSKIASFALFLLPEN 944
>gi|254780619|ref|YP_003065032.1| primosome assembly protein PriA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 731
Score = 29.6 bits (65), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 287 LQMMRDGRARVCIATDVAARGIDLPDLELV---------IHAELSSNPENLLHRSGRTGR 337
L + G + I T + A+G + P + LV +A+L S+ S TGR
Sbjct: 529 LSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGR 588
Query: 338 AGRKGMSVFVIPQNMQ 353
AGR G+ + Q Q
Sbjct: 589 AGRFGLKSLGLIQAYQ 604
>gi|254780991|ref|YP_003065404.1| excinuclease ABC subunit B [Candidatus Liberibacter asiaticus str.
psy62]
Length = 805
Score = 28.9 bits (63), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 253 TRASVSRFTKVLAEHLFQVVALSGELSQQERSNALQMMRDGRARVCIATDVAARGIDLPD 312
T+ T+ L E +V + E+ ER ++ +R G+ V + ++ G+D+P+
Sbjct: 591 TKRMAEDLTEYLYERNIRVRYMHSEVKTLERIEIIRDLRLGKFDVLVGINLLREGLDIPE 650
Query: 313 LELVIHAELSSNPENLLHRSGRT-----GRAGR 340
LV A L ++ E L RS + GRA R
Sbjct: 651 CGLV--AILDADKEGFL-RSKTSLIQTIGRAAR 680
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 28.9 bits (63), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 36 REKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91
R +L++ TGSGK+VA + S L R +PA L + EL+V G
Sbjct: 453 RMPHLLIAGTTGSGKSVAINTMILSLLY----RMTPAQCRLIMIDPKMLELSVYDG 504
>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 744
Score = 26.2 bits (56), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 40 VLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVG 91
+LV+ TGSGK+VA + S L R P + + EL+V G
Sbjct: 415 ILVAGTTGSGKSVAINTMIMSLLY----RLRPDECRMIMVDPKMLELSVYDG 462
>gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 475
Score = 25.8 bits (55), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 260 FTKVLAEHLFQV-----VALSGELSQQERSNALQMMRDGRARVCIATDV----------- 303
FT + EH+ + V+ E+SQ R + Q R+G+ + A D+
Sbjct: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSIDQKRM 390
Query: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
+ + + + +S+PE+ + S TGR R
Sbjct: 391 FEKFLTQSKISTIFTTRFTSSPESYIKDS--TGRPVR 425
>gi|254780535|ref|YP_003064948.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 247
Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 235 IVNILRYHGAKNAIVFCSTRASVSRFTKVLAEH 267
I +++ + G + +C+ ++ ++ FTK LA+
Sbjct: 139 ITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQE 171
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 25.4 bits (54), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 480 EARWLMPMLCRSSGINRQSIG-AIRVQPDLTFVEVSADGVD 519
E LMP I R S+ A+ + PDL F++ G+D
Sbjct: 142 ETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLD 182
>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
Length = 458
Score = 25.4 bits (54), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80
+NL Q I++ L K + A GSGKTV+ AL+ L L I
Sbjct: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKS--------VLVI 52
Query: 81 APTR 84
AP R
Sbjct: 53 APLR 56
>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 957
Score = 25.4 bits (54), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 80 IAPTRELAVQVGRELEWLYAKTGVVVAVCIGGVSVHRERRDLQNGA----HIVVGTPGRL 135
+ R+ ++ G+ ++W A++ ++C G V +D + G H + L
Sbjct: 590 LMANRQKMIETGKGIDWSMAESLAFGSLCYEGYKVRLSGQDCERGTFSHRHAI------L 643
Query: 136 CDHIRGK 142
CD GK
Sbjct: 644 CDQETGK 650
>gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 231
Score = 24.6 bits (52), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 420 FLRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGS 459
F +IH L +PE+++ V L + G D R K GG+
Sbjct: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGA 101
>gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 24.3 bits (51), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 516 DGVDLLRRTVKLDKGIQLKYLGG-----EKPDFRGYKSSGFKSK 554
DG++L RR +LD +++ ++ G PD K++ SK
Sbjct: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103
>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 424
Score = 23.5 bits (49), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 42 VSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAIAPTRELAVQVGRELEW 96
+ TG+ + G A+ + L N ++ L I +RELA + ++W
Sbjct: 346 IPQNTGTTQLFHAGTAIVNNNLTANGGRVLSATALGKTITESRELAYHMVENIDW 400
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,646
Number of Sequences: 1233
Number of extensions: 13661
Number of successful extensions: 56
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 21
length of query: 573
length of database: 328,796
effective HSP length: 79
effective length of query: 494
effective length of database: 231,389
effective search space: 114306166
effective search space used: 114306166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)