HHsearch alignment for GI: 254780602 and conserved domain: COG3033
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism].
Probab=98.74 E-value=8.8e-08 Score=67.45 Aligned_cols=358 Identities=15% Similarity=0.189 Sum_probs=201.5
Q ss_pred HHHHHHHHHHCCCCEEECCCCCC--CCCCC---HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999986997266565897--49889---99999999998388756998778989999999986421013333223
Q gi|254780602|r 19 AAQRVRDLRSKGIDVLCLTAGEP--DFDMP---ENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQ 93 (400)
Q Consensus 19 ~~~~~~~~~~~g~~ii~l~~G~p--~~~~p---~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~ 93 (400)
T Consensus 25 re~RE~al~~ag~N~F~l~Sedv~IDLLTDSGTgams~~qwaamm~GDEAYagsrs~~~L~~avkdif----Gf----q~ 96 (471)
T COG3033 25 REYREEALKKAGYNPFLLDSEDVFIDLLTDSGTGAMTDKQWAAMMRGDEAYAGSRSYYALADAVKDIF----GF----QY 96 (471)
T ss_pred HHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHC----CC----EE
T ss_conf 99999999976998055155645788530588662538999988525354315533899999999861----73----46
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-----CCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC------C--CCHHHHHHC
Q ss_conf 32334543333222222233223-----222233-332322222222222222222222232------2--210333100
Q gi|254780602|r 94 IIVGTGAKHVIFNALMATVNMGD-----EVLIPR-PYWVSYPDMVALCGGIPVFVDTQQDDN------F--QVSPEKLEQ 159 (400)
Q Consensus 94 I~it~G~~~~l~~~~~~~~~~Gd-----~Vlv~~-P~y~~y~~~~~~~g~~~~~v~~~~~~~------~--~~d~~~l~~ 159 (400)
T Consensus 97 ~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~ 176 (471)
T COG3033 97 TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLER 176 (471)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 51255773177788999841032067741012345312022677875487021231665566455688778657999999
Q ss_pred CCCC----CCCCEEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-C---CCC---CCCCCCCCCCCCCCC
Q ss_conf 0122----122012113542-100001233332111223333320111012211-0---000---012233222111233
Q gi|254780602|r 160 AITP----KTKWLFLNSPSN-PSGVVYSQNRLRALADVLVRNPHVHIISDDIYE-H---IVY---RNCQFSNIVNVEPSL 227 (400)
Q Consensus 160 ~i~~----~~k~i~l~nP~N-PTG~v~s~~~l~~i~~~~a~~~~i~ii~De~Y~-~---l~~---~~~~~~s~~~~~~~~ 227 (400)
T Consensus 177 lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~i-a~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm 255 (471)
T COG3033 177 LIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEI-AKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREM 255 (471)
T ss_pred HHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHH-HHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 99873714586899999626667871207769999999-98719958964456654202234247655546099999999
Q ss_pred CCEE-EEECCCCCCCCCCCCCC-CCCCCHHH----HHHHHHHHCCCCCCCCCCCCCC------CCCCCCCCC--CCCCCC
Q ss_conf 3225-74146544322344544-42211012----2687531001222332222222------222223467--643222
Q gi|254780602|r 228 YERT-LVVNGVSKAYAMTGLRI-GYAAGALS----LIKSMIVLQGQQTSGACSIAQW------AAVEALNGP--QDFVVN 293 (400)
Q Consensus 228 ~~~~-i~~~S~SK~~~~~G~Ri-G~~v~~~~----li~~l~~~~~~~~~~~~~~~q~------a~~~~l~~~--~~~~~~ 293 (400)
T Consensus 256 ~sYaD~~~mS~KKD~lvn---mGGfl~~~D~~~fDvy~~~~~~~-V~~eG~~tYGgl~GrdmealAvGL~e~~~~~yl~~ 331 (471)
T COG3033 256 YSYADGCTMSAKKDGLVN---MGGFLCFKDDSFFDVYEECRTLV-VVQEGFPTYGGLAGRDMEALAVGLREGVNFDYLAH 331 (471)
T ss_pred HHHHHHHEEECCCCCEEC---CCCEEEECCCCHHHHHHHHHHHE-EEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 865124302025452422---46578864750778999987665-75126666576442328999978887427089999
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCC--CCCC-
Q ss_conf 2221100000002455304776033027408998626410233211332248989999999987397998350--2289-
Q gi|254780602|r 294 NRKIFEYRRDLCVAQLQGVPGIRYMIPDGAFYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGS--SFGH- 370 (400)
Q Consensus 294 ~~~~~~~~r~~~~~~L~~~~g~~~~~p~g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~--~Fg~- 370 (400)
T Consensus 332 Rv----~Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~lp-hip~e--qFpaqala~ely~e~GiRavElG~~~~~rd 403 (471)
T COG3033 332 RV----AQVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKFLP-HIPAE--QFPAQALACELYKEAGIRAVELGSFSLGRD 403 (471)
T ss_pred HH----HHHHHHHHHHHHC-CCEEEECCCCCEEEEEHHHHCC-CCCHH--HCCHHHHHHHHHHHHCEEEEEEECEECCCC
T ss_conf 99----9999999888865-9736852787169963456367-78824--484778999999983823664201111558
Q ss_pred -C---------CEEEEEEE------CCHHHHHHHHHHHHHHHH
Q ss_conf -9---------72899962------999999999999999998
Q gi|254780602|r 371 -G---------PSIRISYA------VSDAILEEACVRIKRFCH 397 (400)
Q Consensus 371 -~---------~~iRis~~------~~~e~l~~al~rl~~~l~ 397 (400)
T Consensus 404 ~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~ 446 (471)
T COG3033 404 PKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAE 446 (471)
T ss_pred CCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 7764347871230467435111456679999999999985424