HHsearch alignment for GI: 254780602 and conserved domain: PRK05093
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed.
Probab=99.64 E-value=4.3e-15 Score=111.99 Aligned_cols=339 Identities=15% Similarity=0.144 Sum_probs=187.9
Q ss_pred HCCCCEEECCCCCC--CCC-CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86997266565897--498-899999999999838875699877898999999998642101333322332334543333
Q gi|254780602|r 28 SKGIDVLCLTAGEP--DFD-MPENVKYAVVRAMERGETKYTAVAGISPLREAIVEKFRRDNDLHYTSDQIIVGTGAKHVI 104 (400)
Q Consensus 28 ~~g~~ii~l~~G~p--~~~-~p~~i~~a~~~al~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~e~I~it~G~~~~l 104 (400)
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~I~~Ai~~Q~~~l~~--~~~~~~~~~~~~lae~L~~~~----~~drv~f~~SGSEAv 110 (403)
T PRK05093 37 QQGREYIDFAGGIAVTALGHCHPALVKALKEQGEKLWH--ISNVFTNEPALRLAKKLVDAT----FAERVFFANSGAEAN 110 (403)
T ss_pred CCCCEEEECCCCHHHCEECCCCHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHCC----CCCEEEEECCHHHHH
T ss_conf 99799999550888503289979999999999875577--757414889999999986416----877599838677899
Q ss_pred CCCCCCC-------CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCC--CCHHHHHHCCCCCCCCCEEE
Q ss_conf 2222222-------3322-322223333232222222222222222----22222322--21033310001221220121
Q gi|254780602|r 105 FNALMAT-------VNMG-DEVLIPRPYWVSYPDMVALCGGIPVFV----DTQQDDNF--QVSPEKLEQAITPKTKWLFL 170 (400)
Q Consensus 105 ~~~~~~~-------~~~G-d~Vlv~~P~y~~y~~~~~~~g~~~~~v----~~~~~~~~--~~d~~~l~~~i~~~~k~i~l 170 (400)
T Consensus 111 E~AiklAr~~~~~~~~~~r~~ii~~~~~yHG~t~~a~s~~g~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~iaAvii 190 (403)
T PRK05093 111 EAALKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAALKAVIDDKTCAVVV 190 (403)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCHHCCCCCCCCCCCEECCCCCHHHHHHCCCCCEEEEEE
T ss_conf 99999999999972899875477775886888368776258801102778999775655633688886033774479999
Q ss_pred CCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 135-4210000-123333211122333332011101221100000122332-2211123332257414654432234454
Q gi|254780602|r 171 NSP-SNPSGVV-YSQNRLRALADVLVRNPHVHIISDDIYEHIVYRNCQFSN-IVNVEPSLYERTLVVNGVSKAYAMTGLR 247 (400)
Q Consensus 171 ~nP-~NPTG~v-~s~~~l~~i~~~~a~~~~i~ii~De~Y~~l~~~~~~~~s-~~~~~~~~~~~~i~~~S~SK~~~~~G~R 247 (400)
T Consensus 191 -EPi~g~gG~~~~~~~yl~~lr~lc-~~~gillI~DEV~tG~GRtG~~fa~e~~gv~PD-----iv--~~gKglg-gG~P 260 (403)
T PRK05093 191 -EPIQGEGGVIPATPEFLQGLRELC-DKHNALLIFDEVQTGMGRTGDLYAYMHYGVTPD-----IL--TSAKALG-GGFP 260 (403)
T ss_pred -ECCCCCCCCCCCCHHHHHHHHHHH-HHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC-----EE--EECCCCC-CCCC
T ss_conf -576678997589999999999863-016837986013426887777522236898998-----89--9730015-8864
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC----CCCEEEECCCC
Q ss_conf 44221101226875310012223322222222222234676432222221100000002455304----77603302740
Q gi|254780602|r 248 IGYAAGALSLIKSMIVLQGQQTSGACSIAQWAAVEALNGPQDFVVNNRKIFEYRRDLCVAQLQGV----PGIRYMIPDGA 323 (400)
Q Consensus 248 iG~~v~~~~li~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~----~g~~~~~p~g~ 323 (400)
T Consensus 261 lsav~~~~~i~~~~~~~~~g~T~~g~pla~aaala~L~~i~~--~~l~~~a~~~G~~l~~~L~~l~~~~~~i~~VRG~G- 337 (403)
T PRK05093 261 IGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINT--PEVLEGVKAREQRFVDGLQKINEKYGVFSEIRGKG- 337 (403)
T ss_pred EEEEEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC-
T ss_conf 279987288786507877265898589999999999999963--44999999999999999999986289826665412-
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCCEEEEE--EECCHHHHHHHHHHHHHHHHHC
Q ss_conf 899862641023321133224898999999998739799835022899728999--6299999999999999999860
Q gi|254780602|r 324 FYLYPSCQDLIGKKSPSGDVIRTDLDFVNGLLEIEKVAVVQGSSFGHGPSIRIS--YAVSDAILEEACVRIKRFCHSL 399 (400)
Q Consensus 324 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~~iRis--~~~~~e~l~~al~rl~~~l~~l 399 (400)
T Consensus 338 lm~giel~~~~---------~~~a~~i~~~~~-~~Gll~~~~g----~n~irl~PPL~it~~eid~~l~~l~~al~eV 401 (403)
T PRK05093 338 LLIGAELNEQY---------KGRARDFLYAAA-EEGVMVLVAG----PDVLRFAPSLVIPDADIDEGLARFEKAVAKV 401 (403)
T ss_pred EEEEEEECCCC---------CHHHHHHHHHHH-HCCCEEECCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 69999965875---------216999999999-6892895279----9979997884489999999999999999998